Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10361 Brassica carinata HOM05D001272 ORTHO05D032101 2.7e-58 228.4 113 100.0
C04p29760 Brassica napus HOM05D001272 ORTHO05D032101 4.8e-47 191.0 101 93.1
BolC4t24510H Brassica oleracea HOM05D001272 ORTHO05D032101 3.5e-45 184.9 101 90.1
A09p14030 Brassica napus HOM05D001272 ORTHO05D009067 2.7e-21 105.5 60 90.0
BcaC04g22664 Brassica carinata HOM05D001272 ORTHO05D009067 5.9e-21 104.4 60 88.3
C09p16920 Brassica napus HOM05D001272 ORTHO05D009067 5.9e-21 104.4 60 88.3
BolC9t54589H Brassica oleracea HOM05D001272 ORTHO05D009067 5.9e-21 104.4 60 88.3
CARHR047030 Cardamine hirsuta HOM05D001272 ORTHO05D009067 5.9e-21 104.4 60 88.3
Sp2g00750 Schrenkiella parvula HOM05D001272 ORTHO05D009067 5.9e-21 104.4 60 88.3
Thhalv10023425m.g Eutrema salsugineum HOM05D001272 ORTHO05D009067 1.0e-20 103.6 60 86.7
AL2G11170 Arabidopsis lyrata HOM05D001272 ORTHO05D009067 1.7e-20 102.8 60 86.7
AT1G63940 Arabidopsis thaliana HOM05D001272 ORTHO05D009067 1.7e-20 102.8 60 86.7
BcaB07g31535 Brassica carinata HOM05D001272 ORTHO05D009067 1.7e-20 102.8 60 86.7
BraA09t37050Z Brassica rapa HOM05D001272 ORTHO05D009067 1.7e-20 102.8 60 88.3
Aa31LG2G1050 Aethionema arabicum HOM05D001272 ORTHO05D009067 2.3e-20 102.4 60 86.7
Carub.0002s0090 Capsella rubella HOM05D001272 ORTHO05D009067 8.6e-20 100.5 60 83.3
THA.LOC104809369 Tarenaya hassleriana HOM05D001272 ORTHO05D009067 2.8e-18 95.5 63 76.2
Cfa012237 Carpinus fangiana HOM05D001272 ORTHO05D009067 3.1e-17 92.0 60 75.0
Migut.A00725 Erythranthe guttata HOM05D001272 ORTHO05D009067 5.2e-17 91.3 60 71.7
Lj8A216T74 Lonicera japonica HOM05D001272 ORTHO05D009067 8.9e-17 90.5 62 69.4
Potri.001G099600 Populus trichocarpa HOM05D001272 ORTHO05D009067 8.9e-17 90.5 60 73.3
Haze_08764 Corylus avellana HOM05D001272 ORTHO05D009067 1.2e-16 90.1 60 73.3
Haze_08767 Corylus avellana HOM05D001272 ORTHO05D009067 1.2e-16 90.1 60 73.3
Gohir.D12G233700 Gossypium hirsutum HOM05D001272 ORTHO05D009067 1.2e-16 90.1 60 73.3
SalBow8G3189 Salvia bowleyana HOM05D001272 ORTHO05D009067 1.5e-16 89.7 60 73.3
Hma1.2p1_0216F.1_g091010 Hydrangea macrophylla HOM05D001272 ORTHO05D009067 2.0e-16 89.4 60 71.7
Hma1.2p1_0216F.1_g091020 Hydrangea macrophylla HOM05D001272 ORTHO05D009067 2.0e-16 89.4 60 71.7
SGA_v2.0_scaffold521G52695 Striga asiatica HOM05D001272 ORTHO05D009067 2.0e-16 89.4 60 73.3
Cpa.g.sc2231.1 Carica papaya HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 68.3
ClCG01G002370 Citrullus lanatus HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 70.0
Ciclev10019842m.g Citrus clementina HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 71.7
COL.COLO4_08367 Corchorus olitorius HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 71.7
MELO3C005708.2 Cucumis melo HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 70.0
CsaV3_5G002470 Cucumis sativus L. HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 70.0
Hund14276 Selenicereus undatus HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 71.7
GSVIVG01019412001 Vitis vinifera HOM05D001272 ORTHO05D009067 2.6e-16 89.0 60 70.0
MD14G1111300 Malus domestica HOM05D001272 ORTHO05D009067 3.4e-16 88.6 60 71.7
Oeu042355.1 Olea europaea HOM05D001272 ORTHO05D009067 3.4e-16 88.6 60 71.7
QL12p031896 Quercus lobata HOM05D001272 ORTHO05D009067 3.4e-16 88.6 60 71.7
Gorai.008G250000 Gossypium raimondii HOM05D001272 ORTHO05D009067 4.4e-16 88.2 60 71.7
Rhsim07G0087700 Rhododendron simsii HOM05D001272 ORTHO05D009067 4.4e-16 88.2 60 68.3
ATR0661G449 Amborella trichopoda HOM05D001272 ORTHO05D009067 5.8e-16 87.8 60 66.7
CANSAT21G0654 Cannabis sativa HOM05D001272 ORTHO05D009067 5.8e-16 87.8 66 63.6
TAR375G0428 Trochodendron aralioides HOM05D001272 ORTHO05D009067 7.5e-16 87.4 60 70.0
EL10Ac5g12830 Beta vulgaris HOM05D001272 ORTHO05D009067 9.8e-16 87.0 60 68.3
PGR042G0751 Punica granatum HOM05D001272 ORTHO05D009067 9.8e-16 87.0 60 71.7
Sed0006187 Sechium edule HOM05D001272 ORTHO05D009067 9.8e-16 87.0 60 68.3
CiPaw.12G089700 Carya illinoinensis HOM05D001272 ORTHO05D009067 1.3e-15 86.7 60 70.0
Dinv38902 Davidia involucrata HOM05D001272 ORTHO05D009067 1.3e-15 86.7 60 68.3
Gohir.A12G233700 Gossypium hirsutum HOM05D001272 ORTHO05D009067 1.3e-15 86.7 60 70.0
MSTRG.13858 Avicennia marina HOM05D001272 ORTHO05D009067 1.7e-15 86.3 66 63.6
CSS0006743 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 1.7e-15 86.3 60 70.0
CSS0020551 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 1.7e-15 86.3 60 70.0
AUR62010744 Chenopodium quinoa HOM05D001272 ORTHO05D009067 1.7e-15 86.3 60 68.3
Prupe.5G106000 Prunus persica HOM05D001272 ORTHO05D009067 1.7e-15 86.3 60 71.7
Atru.chr9.2124 Acer truncatum HOM05D001272 ORTHO05D009067 2.9e-15 85.5 60 70.0
AUR62019748 Chenopodium quinoa HOM05D001272 ORTHO05D009067 2.9e-15 85.5 60 70.0
DCAR_005569 Daucus carota HOM05D001272 ORTHO05D009067 3.7e-15 85.1 60 70.0
Eucgr.E00656 Eucalyptus grandis HOM05D001272 ORTHO05D009067 3.7e-15 85.1 60 68.3
vmacro13971 Vaccinium macrocarpon HOM05D001272 ORTHO05D009067 4.9e-15 84.7 60 68.3
Actinidia27365 Actinidia chinensis HOM05D001272 ORTHO05D009067 6.4e-15 84.3 61 70.5
Duzib068G0070 Durio zibethinus HOM05D001272 ORTHO05D009067 6.4e-15 84.3 60 66.7
Lj4g0020327 Lotus japonicus HOM05D001272 ORTHO05D009067 1.1e-14 83.6 60 66.7
Ah.12g051870 Amaranthus hybridus HOM05D001272 ORTHO05D009067 1.4e-14 83.2 60 66.7
Cc08_g15200 Coffea canephora HOM05D001272 ORTHO05D009067 1.4e-14 83.2 60 65.0
Manes.01G057400 Manihot esculenta HOM05D001272 ORTHO05D009067 1.4e-14 83.2 62 69.4
Nitab4.5_0003015g0030 Nicotiana tabacum HOM05D001272 ORTHO05D009067 1.4e-14 83.2 60 65.0
Sopen08g029850 Solanum pennellii HOM05D001272 ORTHO05D009067 1.4e-14 83.2 66 60.6
Thecc.03G285900 Theobroma cacao HOM05D001272 ORTHO05D009067 1.9e-14 82.8 60 66.7
arahy.Tifrunner.gnm1.ann1.BN59M2 Arachis hypogaea HOM05D001272 ORTHO05D009067 2.4e-14 82.4 60 63.3
arahy.Tifrunner.gnm1.ann1.MISE4Z Arachis hypogaea HOM05D001272 ORTHO05D009067 2.4e-14 82.4 60 63.3
CAN.G532.34 Capsicum annuum HOM05D001272 ORTHO05D009067 2.4e-14 82.4 60 65.0
Duzib205G0044 Durio zibethinus HOM05D001272 ORTHO05D009067 3.2e-14 82.0 60 65.0
Glyma.08G017800 Glycine max HOM05D001272 ORTHO05D009067 3.2e-14 82.0 60 66.7
RcHm_v2.0_Chr7g0196651 Rosa chinensis HOM05D001272 ORTHO05D009067 3.2e-14 82.0 60 63.3
Sc01g0009800 Simmondsia chinensis HOM05D001272 ORTHO05D009067 3.2e-14 82.0 60 65.0
MSTRG.1844 Avicennia marina HOM05D001272 ORTHO05D009067 4.1e-14 81.6 66 60.6
TPR.G12899 Trifolium pratense HOM05D001272 ORTHO05D009067 4.1e-14 81.6 68 61.8
Solyc08g081530.3 Solanum lycopersicum HOM05D001272 ORTHO05D009067 7.0e-14 80.9 66 59.1
Lsat_1_v5_gn_6_85001 Lactuca sativa HOM05D001272 ORTHO05D009067 9.2e-14 80.5 67 62.7
Nn1g01649 Nelumbo nucifera HOM05D001272 ORTHO05D009067 9.2e-14 80.5 60 61.7
PGSC0003DMG400012322 Solanum tuberosum HOM05D001272 ORTHO05D009067 9.2e-14 80.5 60 63.3
FAN04G1180 Fragaria x ananassa HOM05D001272 ORTHO05D009067 1.2e-13 80.1 60 60.0
FAN08G2811 Fragaria x ananassa HOM05D001272 ORTHO05D009067 1.2e-13 80.1 60 60.0
FAN13G0903 Fragaria x ananassa HOM05D001272 ORTHO05D009067 1.6e-13 79.7 60 58.3
Psat7g030360 Pisum sativum HOM05D001272 ORTHO05D009067 2.0e-13 79.3 62 66.1
Actinidia33733 Actinidia chinensis HOM05D001272 ORTHO05D009067 2.7e-13 79.0 61 65.6
FvH4_5g03130 Fragaria vesca HOM05D001272 ORTHO05D009067 2.7e-13 79.0 60 60.0
Lalb_Chr05g0224521 Lupinus albus HOM05D001272 ORTHO05D009067 2.7e-13 79.0 60 61.7
HanXRQChr03g0085961 Helianthus annuus HOM05D001272 ORTHO05D009067 4.6e-13 78.2 61 65.6
Nitab4.5_0004051g0060 Nicotiana tabacum HOM05D001272 ORTHO05D009067 4.6e-13 78.2 60 61.7
Phvul.002G292800 Phaseolus vulgaris HOM05D001272 ORTHO05D009067 4.6e-13 78.2 60 61.7
PSO063G0795 Papaver somniferum HOM05D001272 ORTHO05D009067 7.8e-13 77.4 60 60.0
PSO170G3348 Papaver somniferum HOM05D001272 ORTHO05D009067 7.8e-13 77.4 60 60.0
CSS0027614 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 1.7e-12 76.3 60 63.3
Os08g0151800 Oryza sativa ssp. japonica HOM05D001272 ORTHO05D009067 1.7e-12 76.3 60 56.7
ECA240G0171 Erigeron canadensis HOM05D001272 ORTHO05D009067 2.3e-12 75.9 67 59.7
VMungo0251G0481 Vigna mungo HOM05D001272 ORTHO05D009067 2.3e-12 75.9 60 61.7
Ca_10948_v3 Cicer arietinum L. HOM05D001272 ORTHO05D009067 3.9e-12 75.1 62 61.3
Ca_17510_v3 Cicer arietinum L. HOM05D001272 ORTHO05D009067 3.9e-12 75.1 62 61.3
Medtr8g098910 Medicago truncatula HOM05D001272 ORTHO05D009067 5.0e-12 74.7 62 61.3
CDE04G1183 Ceratophyllum demersum HOM05D001272 ORTHO05D009067 1.5e-11 73.2 60 56.7
EL10Ac6g13724 Beta vulgaris HOM05D001272 ORTHO05D088214 2.5e-11 72.4 58 63.8
Zm00001eb416430 Zea mays HOM05D001272 ORTHO05D009067 5.6e-11 71.2 60 55.0
unitig_748.g7425 Utricularia gibba HOM05D001272 ORTHO05D009067 9.5e-11 70.5 60 55.0
Sabra01G0074700 Salix brachista HOM05D001272 ORTHO05D009067 1.2e-08 63.5 60 56.7
SMO118G0307 Selaginella moellendorffii HOM05D001272 ORTHO05D009067 2.6e-08 62.4 60 50.0


User provided reference genes

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