Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 2.9e-37 157.9 73 100.0
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 3.7e-24 114.4 58 86.2
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 3.1e-23 111.3 56 83.9
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 1.6e-22 109.0 59 84.7
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 1.6e-22 109.0 59 84.7
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 5.9e-22 107.1 57 78.9
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 5.0e-21 104.0 52 80.8
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 6.6e-21 103.6 53 79.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 6.6e-21 103.6 53 79.2
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 6.6e-21 103.6 53 79.2
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 9.5e-20 99.8 54 68.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 9.5e-20 99.8 53 77.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 9.5e-20 99.8 53 77.4
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.2e-19 99.4 51 76.5
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.2e-19 99.4 61 65.6
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 1.6e-19 99.0 53 73.6
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.8e-19 98.2 53 75.5
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 3.6e-19 97.8 53 73.6
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.3e-18 95.1 53 71.7
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 2.3e-18 95.1 57 64.9
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 8.9e-18 93.2 51 68.6
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 8.9e-18 93.2 51 68.6
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 8.9e-18 93.2 51 68.6
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.2e-17 92.8 51 68.6
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 2.6e-17 91.7 51 66.7
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 7.5e-17 90.1 49 71.4
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 1.3e-16 89.4 51 66.7
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.2e-16 88.6 55 58.2
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 2.8e-16 88.2 59 55.9
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 2.8e-16 88.2 51 64.7
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.7e-16 87.8 63 58.7
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.7e-16 87.8 63 58.7
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 3.7e-16 87.8 51 64.7
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 6.3e-16 87.0 63 57.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.3e-16 87.0 63 57.1
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.3e-16 87.0 63 57.1
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 6.3e-16 87.0 55 56.4
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 8.3e-16 86.7 51 64.7
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 8.3e-16 86.7 51 64.7
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 1.1e-15 86.3 51 62.7
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 1.1e-15 86.3 59 52.5
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.1e-15 86.3 61 50.8
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.1e-15 86.3 51 64.7
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.1e-15 86.3 59 59.3
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 1.1e-15 86.3 56 57.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.1e-15 86.3 51 62.7
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.4e-15 85.9 59 52.5
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.4e-15 85.9 60 56.7
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.8e-15 85.5 51 60.8
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 1.8e-15 85.5 52 61.5
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.8e-15 85.5 59 57.6
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.8e-15 85.5 63 57.1
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.8e-15 85.5 59 54.2
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.4e-15 85.1 50 66.0
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 3.2e-15 84.7 57 56.1
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 4.1e-15 84.3 55 56.4
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 4.1e-15 84.3 51 60.8
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 4.1e-15 84.3 51 64.7
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 4.1e-15 84.3 59 50.8
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 5.4e-15 84.0 59 57.6
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 5.4e-15 84.0 51 62.7
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 5.4e-15 84.0 60 55.0
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 5.4e-15 84.0 51 60.8
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.4e-15 84.0 51 60.8
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 7.0e-15 83.6 51 60.8
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 7.0e-15 83.6 59 54.2
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 7.0e-15 83.6 59 52.5
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.0e-15 83.6 51 60.8
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.0e-15 83.6 51 60.8
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 9.2e-15 83.2 51 58.8
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 9.2e-15 83.2 59 50.8
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 9.2e-15 83.2 63 55.6
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.2e-14 82.8 60 58.3
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.2e-14 82.8 53 54.7
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.6e-14 82.4 55 56.4
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.6e-14 82.4 51 58.8
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.6e-14 82.4 55 52.7
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 2.0e-14 82.0 51 58.8
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 2.0e-14 82.0 49 61.2
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.0e-14 82.0 50 60.0
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 2.7e-14 81.6 57 57.9
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 3.5e-14 81.3 51 56.9
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 4.6e-14 80.9 59 49.2
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 4.6e-14 80.9 50 60.0
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 7.8e-14 80.1 56 50.0
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.3e-13 79.3 51 56.9
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 1.3e-13 79.3 59 50.8
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 1.7e-13 79.0 59 47.5
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 6.6e-13 77.0 53 54.7
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.1e-12 76.3 55 52.7
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 1.5e-12 75.9 52 53.8
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.3e-12 74.3 55 52.7
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 7.3e-12 73.6 49 49.0
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.2e-11 72.8 50 48.0
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 2.1e-11 72.0 43 69.8
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 3.6e-11 71.2 46 58.7
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 3.6e-11 71.2 62 50.0
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 3.6e-11 71.2 51 51.0
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 6.1e-11 70.5 50 46.0
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.8e-10 68.9 56 50.0
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.6e-09 65.1 64 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 2.4e-07 58.5 49 46.9
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 3.2e-07 58.2 53 41.5
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 4.1e-07 57.8 40 52.5
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 4.1e-07 57.8 53 41.5
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 5.4e-07 57.4 46 47.8
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-06 56.2 24 100.0
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 4.6e-06 54.3 44 45.5


User provided reference genes

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