Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.5e-95 352.8 177 100.0
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.5e-95 352.8 177 100.0
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 1.0e-88 330.1 189 89.4
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 3.1e-85 318.5 190 85.8
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 1.1e-82 310.1 190 82.6
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 1.9e-82 309.3 190 82.1
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.6e-81 306.2 190 81.6
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.3e-80 302.4 190 80.5
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 5.7e-79 297.7 190 79.5
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 9.8e-79 297.0 190 77.9
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 6.3e-78 294.3 190 79.5
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 1.8e-77 292.7 191 78.0
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 8.6e-75 283.9 183 79.2
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.5e-74 283.1 190 75.3
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.4e-70 267.7 190 70.5
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.0e-63 246.1 163 76.1
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.0e-63 246.1 163 76.1
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 7.5e-63 244.2 190 63.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 9.8e-63 243.8 163 76.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 9.8e-63 243.8 163 76.1
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.1e-61 240.4 190 63.2
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.9e-61 239.6 190 62.6
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.4e-61 239.2 190 64.2
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 5.4e-61 238.0 190 62.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 9.2e-61 237.3 190 62.1
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.6e-60 236.5 190 63.7
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 2.1e-60 236.1 190 63.7
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 2.1e-60 236.1 190 61.6
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 2.7e-60 235.7 190 60.5
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 3.5e-60 235.3 190 60.0
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 3.5e-60 235.3 190 62.1
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 4.6e-60 235.0 189 62.4
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 6.0e-60 234.6 190 60.0
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 7.8e-60 234.2 189 60.8
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 7.8e-60 234.2 190 61.1
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.0e-59 233.8 190 61.6
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 1.0e-59 233.8 189 60.8
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.3e-59 233.4 190 60.5
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 2.3e-59 232.6 190 61.1
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 3.9e-59 231.9 190 61.1
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 3.9e-59 231.9 191 58.6
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 3.9e-59 231.9 189 59.8
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.9e-59 231.9 190 60.0
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 5.1e-59 231.5 190 60.0
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 5.1e-59 231.5 189 60.3
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.6e-59 231.1 190 60.0
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 6.6e-59 231.1 190 62.1
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 8.6e-59 230.7 190 60.0
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.1e-58 230.3 190 59.5
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 1.5e-58 229.9 190 60.5
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.5e-58 229.2 190 59.5
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.5e-58 229.2 190 58.9
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 2.5e-58 229.2 188 60.6
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 2.5e-58 229.2 188 60.6
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 2.5e-58 229.2 188 60.6
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 5.6e-58 228.0 189 60.8
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 5.6e-58 228.0 190 59.5
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.3e-58 227.6 190 58.4
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 7.3e-58 227.6 190 58.9
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.2e-57 226.9 190 58.4
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 4.7e-57 224.9 190 56.3
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 4.7e-57 224.9 189 58.7
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 4.7e-57 224.9 190 57.9
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 6.2e-57 224.6 188 59.0
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 6.2e-57 224.6 190 56.3
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 1.1e-56 223.8 190 59.5
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 2.3e-56 222.6 190 55.3
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 3.1e-56 222.2 125 84.8
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 3.1e-56 222.2 190 58.9
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 3.1e-56 222.2 191 58.1
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 4.0e-56 221.9 190 55.8
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 5.2e-56 221.5 190 57.4
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 2.0e-55 219.5 190 58.4
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 3.4e-55 218.8 189 56.6
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 4.4e-55 218.4 189 57.1
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.9e-54 215.7 191 56.5
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 4.9e-54 214.9 190 56.8
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 6.4e-54 214.5 190 54.7
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.1e-53 213.8 179 57.0
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 4.1e-53 211.8 195 54.4
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 5.4e-53 211.5 189 54.0
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 7.1e-53 211.1 190 54.7
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 4.6e-52 208.4 188 56.9
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 4.6e-52 208.4 208 50.5
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 7.8e-52 207.6 179 55.9
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 2.3e-51 206.1 206 53.4
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 2.3e-51 206.1 192 54.2
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 3.0e-51 205.7 190 53.7
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 1.1e-50 203.8 191 53.9
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.1e-50 203.8 192 53.1
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 2.1e-49 199.5 163 62.0
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 2.8e-49 199.1 188 53.2
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 8.1e-49 197.6 163 60.1
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 3.8e-46 188.7 162 57.4
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 1.4e-45 186.8 190 51.6
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.9e-45 186.4 166 55.4
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 3.2e-45 185.7 162 56.2
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 2.1e-44 183.0 162 51.2
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 1.0e-43 180.6 128 64.8
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 6.6e-43 177.9 137 64.2
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.1e-42 177.2 162 63.6
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.9e-42 176.4 190 50.0
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 2.5e-42 176.0 160 59.4
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 4.2e-37 158.7 190 46.8
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 4.2e-37 158.7 177 47.5
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 9.3e-37 157.5 122 56.6
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 3.0e-35 152.5 179 49.7
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 1.9e-34 149.8 125 54.4
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 2.1e-33 146.4 189 42.9
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.0e-31 139.8 190 42.1
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 7.6e-31 137.9 215 41.4
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 2.9e-30 136.0 191 41.4
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.8e-30 135.6 190 40.0
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.2e-29 132.5 192 38.5
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 9.3e-29 131.0 112 55.4
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.2e-28 130.6 117 54.7
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 9.6e-26 120.9 119 53.8
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 1.6e-25 120.2 157 42.7
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 2.1e-25 119.8 78 69.2
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.8e-25 119.4 119 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 1.2e-23 114.0 164 42.1
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.2e-23 114.0 156 40.4
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.2e-23 114.0 123 50.4
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.4e-23 112.5 119 47.9
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 4.5e-23 112.1 156 37.8
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 3.2e-21 105.9 191 33.5
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.3e-19 99.8 67 64.2
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.9e-18 96.7 83 57.8
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 3.7e-17 92.4 73 58.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.7e-17 92.4 182 34.1
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.1e-16 89.0 64 59.4
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 6.9e-16 88.2 64 59.4
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 3.4e-15 85.9 163 31.3
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.6e-12 77.0 64 65.6
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 3.0e-11 72.8 64 60.9
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.9e-11 72.4 126 34.9
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 2.6e-07 59.7 53 49.1
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 1.0e-06 57.8 153 26.8


User provided reference genes

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