Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 4.3e-220 767.7 386 100.0
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-215 750.7 398 96.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.7e-213 745.7 398 96.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-211 739.2 397 95.0
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.6e-211 739.2 397 95.0
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 8.4e-208 726.9 398 94.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 8.1e-195 683.7 408 87.0
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 9.0e-194 680.2 408 86.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-193 679.9 398 89.2
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.0e-193 679.1 404 86.6
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.6e-190 669.5 410 85.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.3e-188 661.4 404 85.6
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.8e-187 658.7 408 84.6
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 8.1e-187 657.1 404 85.4
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 8.1e-187 657.1 408 84.3
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.6e-179 632.9 406 80.5
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 4.1e-170 601.7 411 75.9
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.4e-161 572.0 411 73.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.9e-159 566.2 409 72.9
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.6e-156 555.8 407 71.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 3.3e-156 555.4 408 71.8
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.8e-155 552.4 408 71.3
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 8.2e-155 550.8 409 71.4
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 3.1e-154 548.9 408 70.8
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 5.3e-154 548.1 409 71.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.6e-153 545.8 410 70.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.9e-153 544.7 406 70.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-151 540.4 410 70.5
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.5e-148 530.0 367 72.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 7.4e-148 527.7 368 72.3
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.7e-147 526.6 400 68.2
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.4e-146 523.5 389 70.4
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 5.3e-146 521.5 355 72.1
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.6e-145 520.0 358 74.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.3e-144 516.9 351 74.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.9e-144 515.8 357 72.5
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 4.2e-143 511.9 412 65.5
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.1e-142 508.1 379 67.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 8.0e-142 507.7 381 66.7
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.0e-141 507.3 393 67.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.3e-141 506.1 387 67.2
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 6.7e-141 504.6 364 71.2
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 8.8e-141 504.2 361 70.4
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.5e-140 503.4 351 70.1
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.6e-140 502.7 352 69.6
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.7e-140 501.5 353 73.4
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 9.7e-140 500.7 380 66.3
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 3.7e-139 498.8 382 67.3
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.8e-139 498.4 363 70.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 6.3e-139 498.0 403 64.3
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 6.3e-139 498.0 403 64.3
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 8.2e-139 497.7 363 70.8
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.1e-138 497.3 381 67.5
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.1e-138 497.3 374 69.3
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.1e-138 495.7 388 66.8
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.1e-138 495.4 372 67.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.3e-138 495.0 364 70.3
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.6e-137 493.4 330 76.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 2.0e-137 493.0 352 70.7
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.7e-137 492.7 357 70.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 7.7e-137 491.1 349 71.3
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.7e-137 491.1 393 64.4
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-136 490.3 394 64.2
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.2e-136 489.6 349 70.2
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.2e-136 489.6 393 64.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.9e-136 489.2 397 64.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 3.8e-136 488.8 405 63.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.8e-136 488.8 394 64.0
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 5.0e-136 488.4 357 69.2
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.1e-135 487.3 389 64.5
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.5e-135 486.9 349 69.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.5e-135 486.1 394 64.0
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 7.2e-135 484.6 357 69.2
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.6e-134 483.4 371 67.1
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.1e-134 483.0 397 64.7
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.1e-134 483.0 357 68.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.1e-134 483.0 357 68.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.7e-134 482.6 331 72.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-134 482.3 393 63.1
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.0e-133 480.7 369 66.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.4e-133 480.3 361 67.6
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 6.8e-133 478.0 376 64.9
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 3.4e-132 475.7 358 66.5
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.7e-132 474.9 349 65.9
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 5.7e-132 474.9 369 64.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 7.5e-132 474.6 362 67.4
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 9.8e-132 474.2 372 65.3
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 2.2e-131 473.0 378 64.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.8e-131 472.6 349 68.8
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 3.7e-131 472.2 374 64.2
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 6.3e-131 471.5 346 67.6
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 7.0e-130 468.0 352 65.3
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 7.0e-130 468.0 368 65.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.2e-129 467.2 350 66.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.0e-129 466.5 362 67.1
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.7e-129 466.1 349 64.5
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.5e-129 465.7 280 86.4
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 4.5e-129 465.3 447 55.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 7.7e-129 464.5 365 64.4
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.0e-128 464.2 329 72.0
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.3e-128 463.0 365 65.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.9e-127 459.9 374 61.0
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 9.5e-127 457.6 394 60.4
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.2e-124 450.7 322 68.6
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.4e-124 449.1 371 61.5
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.4e-124 449.1 371 61.7
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.3e-123 447.2 399 59.1
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 3.7e-123 445.7 331 68.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 4.1e-122 442.2 329 67.5
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 7.0e-122 441.4 379 61.2
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.8e-118 429.5 329 66.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.5e-111 406.4 301 67.4
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.7e-110 402.1 374 58.8
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.3e-107 394.0 354 58.2
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.9e-107 392.1 330 58.8
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.7e-104 383.6 329 59.9
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 5.0e-104 382.1 328 62.5
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-103 379.0 308 59.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.5e-100 368.2 251 74.5
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-97 359.8 302 57.6
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 3.5e-97 359.4 363 54.5
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.0e-97 358.6 229 82.5
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.7e-96 357.1 249 71.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 5.1e-96 355.5 350 56.3
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 6.6e-96 355.1 323 55.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 9.5e-95 351.3 311 53.7
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 8.1e-78 295.0 381 47.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.6e-76 288.5 371 42.3
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 8.4e-75 285.0 327 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.8e-72 277.3 301 48.2
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.1e-69 266.5 289 48.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-67 260.8 320 43.8
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-66 257.3 226 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-65 254.6 293 45.1
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.5e-63 247.7 294 45.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.6e-63 245.7 291 42.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 5.3e-61 239.2 204 64.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 6.9e-61 238.8 231 54.5
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.0e-61 238.4 286 44.4
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.5e-60 236.1 291 41.6
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.4e-59 231.9 298 39.3
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-58 229.2 291 40.9
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.2e-57 228.0 155 74.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-57 226.5 268 43.3
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.9e-55 220.7 178 63.5
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.0e-52 210.7 371 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.4e-47 192.2 152 56.6
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-43 181.0 159 65.4
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.0e-43 179.5 159 60.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.7e-41 173.7 214 44.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-41 173.7 301 36.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-40 171.8 293 34.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.1e-40 169.5 294 36.7
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.1e-39 168.3 138 58.0
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 4.4e-39 166.4 113 77.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-38 164.5 308 33.1
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.8e-38 163.7 301 34.9
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.9e-36 156.0 308 31.2
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.0e-32 143.7 302 33.1
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-28 131.0 297 28.6
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.5e-28 130.2 306 30.4
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-27 128.6 297 28.6
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-26 124.8 376 27.9
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.2e-26 123.6 77 80.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.5e-26 122.9 298 30.9
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.1e-25 120.9 97 68.0
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-25 120.9 124 47.6
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 8.0e-25 119.0 335 28.4
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.5e-23 114.8 98 58.2
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.3e-22 109.4 218 31.7
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.3e-22 109.4 189 33.9
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.4e-21 108.2 352 28.4
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-21 107.8 342 28.1
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.2e-18 97.1 306 26.8
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 9.8e-15 85.5 293 25.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.6e-11 72.8 63 58.7
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-10 70.1 147 33.3


User provided reference genes

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