Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 2416.7 1244 100.0
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2364.0 1247 98.2
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 2357.4 1247 98.0
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2249.2 1248 93.8
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2248.0 1248 93.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2147.5 1251 89.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2052.7 1257 85.8
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1989.9 1259 82.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1968.0 1259 81.7
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1965.7 1257 81.5
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1964.1 1258 81.4
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1944.1 1254 80.4
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1859.7 1185 82.2
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1799.3 1253 74.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1253 68.7
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1612.8 1271 67.0
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1612.4 1271 66.3
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1608.2 1274 66.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1607.0 1247 67.4
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1604.7 1249 68.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1604.3 1274 66.3
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1603.2 1274 66.2
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1251 66.8
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1251 66.8
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1247 67.0
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1590.1 1277 65.5
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1589.7 1273 66.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1277 66.2
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1580.5 1268 65.0
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1579.7 1277 65.0
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1577.4 1260 64.6
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1250 67.0
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1572.4 1243 66.5
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1275 65.6
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1565.4 1278 65.0
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1565.4 1258 65.9
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1561.6 1268 64.8
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1561.2 1274 64.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1559.7 1278 64.7
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1556.6 1264 65.6
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1272 65.2
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1555.0 1257 65.6
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1554.7 1268 64.7
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1548.9 1281 64.6
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1547.7 1274 64.1
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1545.8 1256 65.4
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1539.6 1283 63.3
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1539.2 1265 63.8
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1538.5 1257 64.2
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1535.4 1347 62.0
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1529.2 1263 64.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1528.8 1251 63.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1520.4 1268 63.9
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1520.0 1242 64.3
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1518.8 1245 63.1
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1273 64.7
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1516.5 1279 63.1
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1514.6 1281 62.8
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1512.3 1240 63.4
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1511.1 1260 65.1
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1507.3 1254 63.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1503.8 1317 62.0
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1502.6 1277 62.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1500.7 1296 62.2
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1499.2 1258 62.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1498.4 1253 62.3
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1494.9 1264 62.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1493.0 1233 63.7
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1492.6 1271 62.9
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1489.6 1270 62.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1488.8 1261 62.3
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1486.5 1257 62.3
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1480.7 1183 65.3
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1480.7 1279 62.0
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1477.2 1251 62.8
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1471.1 1335 60.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1469.5 1325 60.5
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1468.4 1325 60.5
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1468.0 1232 64.6
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1468.0 1283 61.8
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1434.5 1168 64.3
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1431.4 1253 60.7
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1422.9 1283 60.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1412.1 1295 59.5
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1402.9 1184 61.9
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1391.7 1265 59.5
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1385.2 1171 63.6
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1331.6 1142 61.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1324.3 1235 58.3
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1324.3 1250 56.7
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1320.4 1232 57.5
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1320.4 993 68.8
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1303.9 1280 55.5
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1292.7 1266 56.2
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1286.2 1022 65.5
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1109.7 1018 58.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1086.6 1243 47.9
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 1.3e-305 1053.5 1259 47.4
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 6.9e-304 1047.7 884 61.0
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 6.9e-304 1047.7 957 57.5
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 7.1e-301 1037.7 958 60.4
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 6.7e-299 1031.2 1228 49.2
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.1e-282 977.2 682 74.6
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 5.7e-266 921.8 885 56.3
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.7e-260 902.9 537 87.2
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.2e-255 887.5 1221 43.2
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.0e-255 886.7 815 58.3
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 5.0e-254 882.1 792 57.7
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 8.3e-241 838.2 604 74.3
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 7.3e-237 825.1 1211 41.7
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 3.5e-199 699.9 1318 36.8
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 9.0e-179 632.1 1110 37.3
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.6e-175 620.2 470 69.4
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.4e-166 591.7 1243 32.7
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 6.3e-164 582.8 498 63.7
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.0e-150 538.9 601 49.6
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 8.0e-143 512.7 670 46.3
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.8e-126 458.4 292 76.4
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.1e-119 434.9 1156 30.2
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 9.8e-117 426.0 711 41.2
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.5e-112 412.1 276 76.1
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.4e-91 341.7 245 75.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 8.1e-87 326.6 335 52.8
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.4e-86 325.9 231 73.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.2e-76 292.0 266 57.5
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.2e-76 292.0 266 57.5
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.0e-73 281.6 200 72.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-72 279.6 248 60.5
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.3e-64 251.5 157 80.9
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.3e-49 202.2 104 91.3
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.7e-39 169.5 111 79.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.3e-38 164.5 117 76.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.1e-30 140.2 1104 22.8
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.0e-28 133.7 104 69.2
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 8.8e-25 120.6 179 41.9
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 2.8e-23 115.5 174 41.4
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.1e-22 112.1 160 44.4
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.7e-20 106.3 161 47.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.6e-18 98.6 138 42.8
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 6.8e-17 94.4 122 39.3
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.5e-16 93.2 95 52.6
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.5e-16 93.2 120 48.3
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.1e-14 87.0 220 32.7
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 2.0e-13 82.8 112 42.9
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 5.6e-11 74.7 113 38.9
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.1e-10 72.8 62 66.1
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.8e-09 69.7 267 27.0
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 5.2e-09 68.2 62 61.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 4.4e-08 65.1 108 40.7
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 5.8e-08 64.7 79 45.6
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.2e-07 62.8 150 36.0
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.8e-06 59.7 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 5.4e-06 58.2 70 44.3


User provided reference genes

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