Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 1.7e-114 416.0 211 100.0
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.5e-33 147.1 243 44.4
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 1.3e-32 144.1 249 44.2
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 2.8e-32 142.9 241 43.6
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 2.8e-32 142.9 241 43.6
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 1.4e-31 140.6 247 44.9
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 3.1e-31 139.4 238 42.9
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 3.1e-31 139.4 238 42.9
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 9.1e-31 137.9 248 43.1
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 1.5e-30 137.1 235 43.8
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 4.5e-30 135.6 245 43.3
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 5.9e-30 135.2 247 42.9
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 2.2e-29 133.3 240 43.3
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 5.0e-29 132.1 249 41.0
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 6.5e-29 131.7 244 43.0
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 6.5e-29 131.7 249 42.6
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 1.9e-28 130.2 245 41.2
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 5.5e-28 128.6 231 42.0
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 7.2e-28 128.3 242 40.9
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.6e-27 127.1 219 43.4
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.8e-26 123.6 219 42.5
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 3.1e-23 112.8 216 39.8
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 1.5e-22 110.5 238 38.2
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 1.5e-22 110.5 237 37.1
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 2.2e-21 106.7 254 38.6
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 2.2e-21 106.7 254 38.6
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 3.8e-21 105.9 241 37.3
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 3.8e-21 105.9 238 37.4
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 5.0e-21 105.5 236 36.9
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 5.5e-20 102.1 234 36.3
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 9.4e-20 101.3 249 36.1
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 1.2e-19 100.9 239 35.1
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.6e-19 100.5 244 36.1
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 2.7e-19 99.8 249 33.3
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 2.7e-19 99.8 238 36.1
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 2.7e-19 99.8 218 35.3
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 3.6e-19 99.4 244 35.7
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 4.7e-19 99.0 239 33.9
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 6.1e-19 98.6 249 36.1
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 1.0e-18 97.8 237 36.7
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 1.8e-18 97.1 249 36.1
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 3.0e-18 96.3 245 35.9
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 4.0e-18 95.9 238 36.1
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 4.0e-18 95.9 258 32.2
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 5.2e-18 95.5 254 34.3
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 5.2e-18 95.5 249 34.5
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 6.7e-18 95.1 248 35.1
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 8.8e-18 94.7 248 32.3
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 8.8e-18 94.7 263 30.8
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 8.8e-18 94.7 243 36.2
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.1e-17 94.4 236 35.2
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 1.1e-17 94.4 251 31.5
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 1.1e-17 94.4 259 33.2
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 1.1e-17 94.4 263 31.2
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 2.0e-17 93.6 246 32.5
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 2.6e-17 93.2 259 32.8
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 2.6e-17 93.2 259 34.4
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 3.3e-17 92.8 262 33.6
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 5.7e-17 92.0 252 31.7
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 5.7e-17 92.0 249 33.7
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.7e-16 90.5 248 33.1
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 1.7e-16 90.5 238 32.4
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 2.2e-16 90.1 241 34.0
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 2.8e-16 89.7 242 33.5
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 8.2e-16 88.2 251 31.1
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 1.1e-15 87.8 234 34.6
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 1.4e-15 87.4 228 33.3
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 1.4e-15 87.4 249 30.1
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 1.8e-15 87.0 259 31.7
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.8e-15 87.0 245 33.9
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 2.4e-15 86.7 245 33.1
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 2.4e-15 86.7 256 30.5
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 2.4e-15 86.7 262 31.3
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 3.1e-15 86.3 260 31.9
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 3.1e-15 86.3 260 31.9
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 5.3e-15 85.5 256 32.8
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.0e-15 85.1 260 31.5
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 9.1e-15 84.7 253 32.4
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 1.6e-14 84.0 273 29.3
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 2.6e-14 83.2 238 31.5
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 2.6e-14 83.2 245 31.0
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 5.9e-14 82.0 260 31.2
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 1.3e-13 80.9 255 30.2
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 1.3e-13 80.9 240 32.5
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.7e-13 80.5 243 32.9
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.7e-13 80.5 249 32.9
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 2.2e-13 80.1 235 29.4
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 5.0e-13 79.0 54 74.1
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 5.0e-13 79.0 251 33.1
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 5.0e-13 79.0 222 30.6
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 8.5e-13 78.2 262 32.1
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 1.9e-12 77.0 265 28.7
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 3.2e-12 76.3 250 31.6
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 3.2e-12 76.3 249 31.7
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 3.2e-12 76.3 265 28.7
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 9.4e-12 74.7 240 32.9
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 1.2e-11 74.3 224 29.5
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 1.6e-11 73.9 62 61.3
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.6e-11 73.9 62 61.3
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 2.7e-11 73.2 208 33.2
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 6.8e-10 68.6 223 30.0
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 5.7e-09 65.5 67 55.2
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 1.8e-07 60.5 37 73.0
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 1.8e-07 60.5 37 73.0
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 2.7e-06 56.6 50 60.0
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.5e-06 56.2 40 65.0


User provided reference genes

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