Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 5.7e-89 330.9 164 100.0
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 5.7e-89 330.9 164 100.0
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 3.7e-88 328.2 164 99.4
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 6.3e-88 327.4 164 98.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 6.3e-88 327.4 164 98.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 5.5e-84 314.3 161 96.3
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 9.7e-81 303.5 164 92.1
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.8e-80 301.2 164 90.2
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.1e-79 298.5 164 89.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.2e-78 296.6 164 89.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.4e-78 295.0 164 89.0
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 3.4e-78 295.0 164 89.0
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 4.5e-78 294.7 164 89.0
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 4.5e-78 294.7 164 88.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.7e-78 293.9 164 87.8
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.3e-77 293.1 164 87.8
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.3e-77 293.1 164 87.8
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.3e-77 293.1 165 89.1
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.7e-77 292.7 164 88.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-77 292.4 164 87.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.9e-77 292.0 164 87.8
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 6.5e-77 290.8 164 87.8
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.9e-76 289.3 164 86.6
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.6e-73 278.9 164 83.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.2e-68 261.9 164 76.8
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 7.2e-68 260.8 164 73.8
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 3.6e-67 258.5 165 75.8
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.1e-67 257.7 165 76.4
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 8.0e-67 257.3 164 76.2
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 8.0e-67 257.3 168 74.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.0e-66 256.9 165 77.0
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.8e-66 256.1 168 73.8
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.5e-65 253.1 165 73.9
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.0e-65 252.7 165 75.8
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.6e-65 252.3 161 72.0
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.3e-65 251.9 162 73.5
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 3.3e-65 251.9 162 75.3
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.3e-64 250.0 157 73.2
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.7e-64 249.6 163 73.6
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.8e-64 248.8 166 72.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.8e-64 248.8 167 74.3
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.8e-64 248.8 164 75.0
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.7e-64 248.4 165 73.9
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.7e-64 248.4 158 73.4
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.7e-64 248.4 166 72.3
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.3e-64 247.7 162 73.5
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.1e-63 246.9 167 73.1
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.1e-63 246.9 164 72.6
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.1e-63 246.9 165 72.7
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.1e-63 246.9 165 73.9
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.1e-63 246.9 166 71.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.8e-63 246.1 171 72.5
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.1e-63 245.4 164 72.6
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 3.1e-63 245.4 174 70.1
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.1e-63 245.4 166 71.1
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 5.3e-63 244.6 174 70.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.1e-63 243.8 164 71.3
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.1e-63 243.8 194 65.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 9.1e-63 243.8 164 72.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 9.1e-63 243.8 166 70.5
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.6e-62 243.0 167 72.5
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.6e-62 243.0 164 72.6
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.6e-62 243.0 164 72.6
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.6e-62 243.0 164 72.6
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.0e-62 242.7 162 71.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.7e-62 242.3 171 70.2
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.7e-62 242.3 194 64.9
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.7e-62 242.3 194 64.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.7e-62 242.3 164 72.6
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.5e-62 241.9 163 73.6
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.5e-62 241.9 166 69.3
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.5e-62 241.5 165 72.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 4.5e-62 241.5 163 70.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 4.5e-62 241.5 164 72.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 4.5e-62 241.5 165 70.9
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.3e-61 240.0 165 72.1
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.7e-61 239.6 163 69.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.7e-61 239.6 166 69.9
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.2e-61 239.2 165 70.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.8e-61 238.4 160 73.1
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 3.8e-61 238.4 168 70.2
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 3.8e-61 238.4 163 71.2
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 8.5e-61 237.3 167 70.7
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.1e-60 236.9 159 73.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-60 236.5 159 72.3
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.9e-60 236.1 169 68.6
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.9e-60 236.1 159 71.7
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 3.2e-60 235.3 164 68.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 4.2e-60 235.0 201 60.2
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.5e-60 234.6 159 71.7
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 7.2e-60 234.2 168 67.3
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 9.4e-60 233.8 164 67.1
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.1e-59 232.6 159 71.1
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 6.1e-59 231.1 169 68.0
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.3e-58 229.2 187 64.7
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.0e-58 228.8 163 68.7
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.2e-57 226.9 147 72.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.5e-57 226.5 160 68.8
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.4e-57 225.3 159 71.7
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 7.5e-57 224.2 171 66.7
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-56 222.2 139 76.3
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.8e-56 222.2 218 51.8
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 8.3e-56 220.7 165 63.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.4e-55 219.9 165 63.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.1e-55 218.8 166 62.7
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 9.1e-55 217.2 165 62.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.2e-54 216.9 162 64.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 3.5e-54 215.3 168 64.9
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.9e-53 212.2 203 57.6
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.1e-52 210.3 206 55.8
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.2e-52 208.4 181 63.5
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 4.7e-51 204.9 255 45.5
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.0e-50 203.8 135 71.9
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.7e-48 196.4 172 61.0
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.8e-48 195.7 164 62.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.9e-46 188.0 120 73.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 7.3e-44 181.0 164 54.9
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 3.6e-43 178.7 113 72.6
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.2e-41 173.7 165 58.2
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.0e-37 158.3 109 76.1
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.6e-35 153.3 100 73.0
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.8e-34 149.8 116 59.5
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.3e-34 149.4 99 71.7
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.1e-34 149.1 113 58.4
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 6.8e-34 147.9 141 47.5
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 9.8e-33 144.1 101 68.3
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.3e-32 143.7 109 67.9
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 3.2e-31 139.0 148 44.6
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 5.4e-31 138.3 89 74.2
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-30 136.7 81 82.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-30 136.7 81 82.7
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.0e-29 132.5 74 87.8
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.6e-28 128.3 111 56.8
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 7.3e-28 127.9 89 67.4
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.9e-24 115.9 98 62.2
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-23 113.2 65 86.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 3.9e-21 105.5 63 74.6
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-20 103.2 96 57.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.1e-19 99.8 61 73.8
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.1e-19 99.8 64 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 2.8e-19 99.4 112 38.4
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.8e-19 99.4 101 42.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.6e-19 99.0 93 55.9
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 6.2e-19 98.2 104 41.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 5.8e-17 91.7 62 62.9
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.2e-16 89.7 82 50.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.5e-14 82.4 106 37.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 6.6e-13 78.2 136 36.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 8.7e-13 77.8 50 68.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-11 73.9 104 42.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.6e-06 57.0 32 84.4
Nn1g07676 Nelumbo nucifera HOM05D004886 ORTHO05D005868 7.8e-06 54.7 29 93.1


User provided reference genes

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