Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10067 Brassica carinata HOM05D001258 ORTHO05D000596 4.1e-40 167.5 81 100.0
C04p33220 Brassica napus HOM05D000559 ORTHO05D000596 9.5e-37 156.4 80 95.0
BolC4t24881H Brassica oleracea HOM05D000559 ORTHO05D000596 2.8e-36 154.8 80 93.8
C02p56270 Brassica napus HOM05D000559 ORTHO05D000596 5.9e-31 137.1 115 66.1
BcaC09g48653 Brassica carinata HOM05D001258 ORTHO05D000158 8.1e-12 73.6 67 67.2
A01p37310 Brassica napus HOM05D001258 ORTHO05D000158 8.1e-12 73.6 67 67.2
C01p47250 Brassica napus HOM05D001258 ORTHO05D000158 8.1e-12 73.6 67 67.2
BolC1t04695H Brassica oleracea HOM05D001258 ORTHO05D000158 8.1e-12 73.6 67 67.2
BraA01t03789Z Brassica rapa HOM05D001258 ORTHO05D000158 8.1e-12 73.6 67 67.2
BcaB06g25794 Brassica carinata HOM05D001258 ORTHO05D000158 6.8e-11 70.5 36 97.2
BcaC05g28836 Brassica carinata HOM05D001258 ORTHO05D000158 6.8e-11 70.5 67 64.2
BolC5t33687H Brassica oleracea HOM05D001258 ORTHO05D000158 6.8e-11 70.5 67 64.2
BcaC01g03794 Brassica carinata HOM05D001258 ORTHO05D000158 2.0e-10 68.9 67 64.2
A05p32710 Brassica napus HOM05D001258 ORTHO05D000158 2.0e-10 68.9 67 64.2
C03p48560 Brassica napus HOM05D001258 ORTHO05D000158 2.0e-10 68.9 67 64.2
BolC3t17134H Brassica oleracea HOM05D001258 ORTHO05D000158 2.0e-10 68.9 67 64.2
BraA05t22093Z Brassica rapa HOM05D001258 ORTHO05D000158 2.0e-10 68.9 67 64.2
A03p40030 Brassica napus HOM05D001258 ORTHO05D000158 3.4e-10 68.2 67 64.2
C05p49410 Brassica napus HOM05D001258 ORTHO05D000158 3.4e-10 68.2 67 62.7
BraA03t13151Z Brassica rapa HOM05D001258 ORTHO05D000158 3.4e-10 68.2 67 64.2
Thhalv10021673m.g Eutrema salsugineum HOM05D001258 ORTHO05D000158 5.8e-10 67.4 36 91.7
Sp3g15240 Schrenkiella parvula HOM05D001258 ORTHO05D000158 5.8e-10 67.4 67 62.7
Aa31LG8G4050 Aethionema arabicum HOM05D001258 ORTHO05D000158 7.5e-10 67.0 36 91.7
Carub.0003s1677 Capsella rubella HOM05D001258 ORTHO05D000158 1.7e-09 65.9 66 60.6
CARHR092270 Cardamine hirsuta HOM05D001258 ORTHO05D000158 3.7e-09 64.7 67 58.2
BcaB04g18923 Brassica carinata HOM05D001258 ORTHO05D000158 6.4e-09 63.9 67 59.7
AL3G30000 Arabidopsis lyrata HOM05D001258 ORTHO05D000158 1.1e-08 63.2 66 57.6
CSS0012118 Camellia sinensis var. sinensis HOM05D001258 ORTHO05D000158 1.1e-08 63.2 35 85.7
CSS0035283 Camellia sinensis var. sinensis HOM05D001258 ORTHO05D000158 1.1e-08 63.2 35 85.7
BcaB03g14932 Brassica carinata HOM05D001258 ORTHO05D000158 1.9e-08 62.4 32 93.8
Haze_01292 Corylus avellana HOM05D001258 ORTHO05D000158 1.9e-08 62.4 36 83.3
Gohir.A09G066100 Gossypium hirsutum HOM05D001258 ORTHO05D000158 1.9e-08 62.4 35 85.7
Gohir.D09G065300 Gossypium hirsutum HOM05D001258 ORTHO05D000158 1.9e-08 62.4 35 85.7
Gorai.006G080000 Gossypium raimondii HOM05D001258 ORTHO05D000158 1.9e-08 62.4 35 85.7
Hma1.2p1_0013F.1_g008640 Hydrangea macrophylla HOM05D001258 ORTHO05D000158 2.4e-08 62.0 35 85.7
AT3G17020 Arabidopsis thaliana HOM05D001258 ORTHO05D000158 4.1e-08 61.2 66 54.5
Cfa015323 Carpinus fangiana HOM05D001258 ORTHO05D000158 5.4e-08 60.8 35 82.9
Ciclev10006081m.g Citrus clementina HOM05D001258 ORTHO05D000158 7.1e-08 60.5 35 80.0
Actinidia18453 Actinidia chinensis HOM05D001258 ORTHO05D000158 9.2e-08 60.1 35 82.9
Actinidia40375 Actinidia chinensis HOM05D001258 ORTHO05D000158 9.2e-08 60.1 35 82.9
DCAR_023353 Daucus carota HOM05D001258 ORTHO05D000158 9.2e-08 60.1 34 85.3
Actinidia15606 Actinidia chinensis HOM05D001258 ORTHO05D000158 1.2e-07 59.7 36 77.8
Actinidia12998 Actinidia chinensis HOM05D001258 ORTHO05D000158 1.6e-07 59.3 35 80.0
BcaC02g08621 Brassica carinata HOM05D032296 ORTHO05D032165 1.6e-07 59.3 29 100.0
THA.LOC104820302 Tarenaya hassleriana HOM05D001258 ORTHO05D000158 1.6e-07 59.3 34 85.3
Thecc.04G299400 Theobroma cacao HOM05D001258 ORTHO05D000158 1.6e-07 59.3 34 82.4
PSO210G1051 Papaver somniferum HOM05D001258 ORTHO05D000158 2.1e-07 58.9 35 80.0
QL06p011859 Quercus lobata HOM05D001258 ORTHO05D000158 2.1e-07 58.9 35 77.1
Rhsim02G0004400 Rhododendron simsii HOM05D001258 ORTHO05D000158 2.1e-07 58.9 35 80.0
BcaB04g18511 Brassica carinata HOM05D001258 ORTHO05D000158 2.7e-07 58.5 31 90.3
Duzib052G0406 Durio zibethinus HOM05D001258 ORTHO05D000158 3.5e-07 58.2 66 51.5
Manes.15G005000 Manihot esculenta HOM05D001258 ORTHO05D000158 3.5e-07 58.2 35 77.1
PGR031G0871 Punica granatum HOM05D001258 ORTHO05D000158 3.5e-07 58.2 34 82.4
CiPaw.02G075400 Carya illinoinensis HOM05D001258 ORTHO05D000158 4.6e-07 57.8 35 77.1
Manes.03G204201 Manihot esculenta HOM05D001258 ORTHO05D000158 4.6e-07 57.8 35 80.0
TWI09G0515 Tripterygium wilfordii HOM05D001258 ORTHO05D000158 4.6e-07 57.8 67 53.7
Duzib151G0296 Durio zibethinus HOM05D001258 ORTHO05D000158 7.8e-07 57.0 34 79.4
PSO761G0086 Papaver somniferum HOM05D001258 ORTHO05D000158 7.8e-07 57.0 67 50.7
HPP92_017246 Vanilla planifolia HOM05D001258 ORTHO05D000158 7.8e-07 57.0 36 69.4
GSVIVG01035004001 Vitis vinifera HOM05D001258 ORTHO05D000158 7.8e-07 57.0 67 52.2
CiPaw.01G139000 Carya illinoinensis HOM05D001258 ORTHO05D000158 1.0e-06 56.6 35 74.3
Os05g0157200 Oryza sativa ssp. japonica HOM05D001258 ORTHO05D000158 1.0e-06 56.6 35 74.3
HPP92_027564 Vanilla planifolia HOM05D001258 ORTHO05D000158 1.0e-06 56.6 34 73.5
ATR1152G099 Amborella trichopoda HOM05D001258 ORTHO05D000158 1.3e-06 56.2 66 48.5
SGA_v2.0_scaffold104G30092 Striga asiatica HOM05D001258 ORTHO05D000158 1.7e-06 55.8 38 68.4
Cpa.g.sc9.67 Carica papaya HOM05D001258 ORTHO05D000158 3.0e-06 55.1 35 74.3
Phvul.006G117600 Phaseolus vulgaris HOM05D001258 ORTHO05D000158 3.0e-06 55.1 36 75.0
Prupe.1G118700 Prunus persica HOM05D001258 ORTHO05D000158 3.0e-06 55.1 35 77.1
TAR633G0127 Trochodendron aralioides HOM05D001258 ORTHO05D000158 3.0e-06 55.1 67 49.3
vmacro15185 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 3.9e-06 54.7 35 77.1
CiPaw.14G027500 Carya illinoinensis HOM05D001258 ORTHO05D000158 5.1e-06 54.3 35 74.3
SalBow5G5217 Salvia bowleyana HOM05D001258 ORTHO05D000158 5.1e-06 54.3 34 76.5
CiPaw.02G196800 Carya illinoinensis HOM05D001258 ORTHO05D000158 6.6e-06 53.9 35 74.3
Gohir.A09G066000 Gossypium hirsutum HOM05D001258 ORTHO05D000158 6.6e-06 53.9 34 73.5
Gohir.D09G065200 Gossypium hirsutum HOM05D001258 ORTHO05D000158 6.6e-06 53.9 34 73.5
Gorai.006G079900 Gossypium raimondii HOM05D001258 ORTHO05D000158 6.6e-06 53.9 34 73.5
Potri.010G144100 Populus trichocarpa HOM05D001258 ORTHO05D000158 6.6e-06 53.9 35 68.6
Rhsim04G0235200 Rhododendron simsii HOM05D000056 ORTHO05D000158 6.6e-06 53.9 36 69.4
ATR0796G070 Amborella trichopoda HOM05D001258 ORTHO05D000158 8.6e-06 53.5 34 70.6
CsaV3_3G015130 Cucumis sativus L. HOM05D001258 ORTHO05D000158 8.6e-06 53.5 35 71.4
Eucgr.A00373 Eucalyptus grandis HOM05D001258 ORTHO05D000158 8.6e-06 53.5 35 71.4


User provided reference genes

Program Settings