Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10038 Brassica carinata HOM05D002055 ORTHO05D031805 3.1e-120 435.3 241 100.0
BolC4t24931H Brassica oleracea HOM05D002055 ORTHO05D031805 1.5e-61 240.4 146 91.8
C04p33630 Brassica napus HOM05D002055 ORTHO05D031805 8.4e-57 224.6 124 98.4
A02p25010 Brassica napus HOM05D002055 ORTHO05D002120 1.2e-26 124.4 120 65.0
BcaC03g16186 Brassica carinata HOM05D002055 ORTHO05D002120 1.5e-26 124.0 120 65.0
C02p39640 Brassica napus HOM05D002055 ORTHO05D002120 1.5e-26 124.0 120 65.0
BolC2t09980H Brassica oleracea HOM05D002055 ORTHO05D002120 1.5e-26 124.0 120 65.0
BraA02t07490Z Brassica rapa HOM05D002055 ORTHO05D002120 3.4e-26 122.9 119 64.7
BcaB05g23668 Brassica carinata HOM05D002055 ORTHO05D002120 7.7e-26 121.7 125 64.0
AL6G50060 Arabidopsis lyrata HOM05D002055 ORTHO05D002120 1.7e-25 120.6 126 60.3
AT4G02860 Arabidopsis thaliana HOM05D002055 ORTHO05D002120 3.8e-25 119.4 126 60.3
Carub.0006s3420 Capsella rubella HOM05D002055 ORTHO05D002120 6.5e-25 118.6 126 58.7
Sp6g02910 Schrenkiella parvula HOM05D002055 ORTHO05D002120 7.9e-23 111.7 123 56.9
Thhalv10028852m.g Eutrema salsugineum HOM05D002055 ORTHO05D002120 3.9e-22 109.4 126 55.6
CARHR251260 Cardamine hirsuta HOM05D002055 ORTHO05D002120 4.4e-21 105.9 98 65.3
CARHR251250 Cardamine hirsuta HOM05D002055 ORTHO05D002120 1.3e-20 104.4 98 64.3
C06p32200 Brassica napus HOM05D002055 ORTHO05D019870 4.1e-19 99.4 62 85.5
BolC4t26787H Brassica oleracea HOM05D002272 ORTHO05D019870 5.3e-19 99.0 115 54.8
BolC6t38344H Brassica oleracea HOM05D002272 ORTHO05D019870 1.6e-18 97.4 56 92.9
BolC4t24932H Brassica oleracea HOM05D002272 ORTHO05D106593 2.0e-18 97.1 51 100.0
BcaC02g08597 Brassica carinata HOM05D002272 ORTHO05D019870 2.6e-18 96.7 58 93.1
BcaC02g08598 Brassica carinata HOM05D002055 ORTHO05D019870 2.6e-18 96.7 56 91.1
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 5.9e-18 95.5 113 54.9
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 5.0e-17 92.4 105 54.3
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 1.1e-16 91.3 101 56.4
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 1.9e-16 90.5 112 51.8
CARHR002540 Cardamine hirsuta HOM05D002055 ORTHO05D002120 3.2e-16 89.7 110 50.9
Thhalv10008339m.g Eutrema salsugineum HOM05D002055 ORTHO05D002120 3.2e-16 89.7 90 55.6
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 4.2e-16 89.4 113 53.1
Aa31LG5G2390 Aethionema arabicum HOM05D002055 ORTHO05D002120 2.7e-15 86.7 124 50.0
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 1.0e-14 84.7 101 53.5
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 2.3e-14 83.6 102 53.9
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 3.0e-14 83.2 117 50.4
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 4.0e-14 82.8 101 52.5
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 5.2e-14 82.4 113 48.7
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 5.2e-14 82.4 113 48.7
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 6.7e-14 82.0 113 52.2
Atru.chr5.1392 Acer truncatum HOM05D002055 ORTHO05D002120 1.2e-13 81.3 100 49.0
THA.LOC104815945 Tarenaya hassleriana HOM05D002055 ORTHO05D002120 2.0e-13 80.5 106 49.1
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 2.6e-13 80.1 113 51.3
BcaC05g24636 Brassica carinata HOM05D002055 ORTHO05D002120 4.4e-13 79.3 107 47.7
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 4.4e-13 79.3 113 51.3
C05p01770 Brassica napus HOM05D002055 ORTHO05D002120 4.4e-13 79.3 107 47.7
BolC5t28955H Brassica oleracea HOM05D002055 ORTHO05D002120 4.4e-13 79.3 107 47.7
Sp6g02890 Schrenkiella parvula HOM05D002055 ORTHO05D002120 5.7e-13 79.0 132 43.2
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 1.3e-12 77.8 113 50.4
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 1.3e-12 77.8 113 50.4
Carub.0005s1239 Capsella rubella HOM05D002055 ORTHO05D002120 1.3e-12 77.8 103 42.7
A10p01790 Brassica napus HOM05D002055 ORTHO05D002120 1.7e-12 77.4 107 45.8
Carub.0004s0501 Capsella rubella HOM05D002055 ORTHO05D002120 2.2e-12 77.0 90 53.3
Sp6g02900 Schrenkiella parvula HOM05D002055 ORTHO05D002120 2.8e-12 76.6 99 49.5
AL1G12690 Arabidopsis lyrata HOM05D002055 ORTHO05D002120 3.7e-12 76.3 119 42.9
BcaB05g23667 Brassica carinata HOM05D002055 ORTHO05D002120 3.7e-12 76.3 123 44.7
A03p30800 Brassica napus HOM05D002055 ORTHO05D002120 6.3e-12 75.5 126 43.7
BraA10t42454Z Brassica rapa HOM05D002055 ORTHO05D002120 6.3e-12 75.5 107 44.9
Carub.0001s0235 Capsella rubella HOM05D002055 ORTHO05D002120 8.2e-12 75.1 107 43.9
BolC3t16039H Brassica oleracea HOM05D002055 ORTHO05D002120 1.4e-11 74.3 98 48.0
Duzib133G1486 Durio zibethinus HOM05D002055 ORTHO05D002120 1.4e-11 74.3 102 44.1
BcaC02g07531 Brassica carinata HOM05D002055 ORTHO05D002120 2.4e-11 73.6 126 42.1
BcaC05g24552 Brassica carinata HOM05D002055 ORTHO05D002120 2.4e-11 73.6 110 43.6
CARHR251240 Cardamine hirsuta HOM05D002055 ORTHO05D002120 2.4e-11 73.6 100 48.0
THA.LOC104816931 Tarenaya hassleriana HOM05D002055 ORTHO05D002120 2.4e-11 73.6 127 44.9
A04p28620 Brassica napus HOM05D002055 ORTHO05D002120 3.1e-11 73.2 128 42.2
BolC4t28098H Brassica oleracea HOM05D002055 ORTHO05D002120 3.1e-11 73.2 126 42.1
BraA04t18339Z Brassica rapa HOM05D002055 ORTHO05D002120 3.1e-11 73.2 128 42.2
BcaC01g06724 Brassica carinata HOM05D002055 ORTHO05D002120 5.3e-11 72.4 109 46.8
C04p65940 Brassica napus HOM05D002055 ORTHO05D002120 7.0e-11 72.0 128 43.0
AT4G02850 Arabidopsis thaliana HOM05D002055 ORTHO05D002120 9.1e-11 71.6 126 43.7
Gohir.D08G077300 Gossypium hirsutum HOM05D002055 ORTHO05D002120 1.2e-10 71.2 93 47.3
Gorai.004G082200 Gossypium raimondii HOM05D002055 ORTHO05D002120 1.2e-10 71.2 93 47.3
Gohir.D08G077200 Gossypium hirsutum HOM05D002055 ORTHO05D002120 1.6e-10 70.9 93 47.3
Sc17g0004020 Simmondsia chinensis HOM05D002055 ORTHO05D002120 1.6e-10 70.9 100 45.0
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.7e-10 70.1 99 46.5
Lsat_1_v5_gn_5_190120 Lactuca sativa HOM05D002055 ORTHO05D002120 2.7e-10 70.1 110 41.8
BcaB06g28997 Brassica carinata HOM05D002055 ORTHO05D002120 3.5e-10 69.7 128 41.4
BcaNung06831 Brassica carinata HOM05D002055 ORTHO05D002120 3.5e-10 69.7 128 41.4
AUR62036798 Chenopodium quinoa HOM05D002055 ORTHO05D002120 3.5e-10 69.7 118 37.3
AT1G03210 Arabidopsis thaliana HOM05D002055 ORTHO05D002120 4.5e-10 69.3 133 38.3
QL02p100842 Quercus lobata HOM05D002055 ORTHO05D002120 4.5e-10 69.3 121 38.8
Atru.chr5.1390 Acer truncatum HOM05D002055 ORTHO05D002120 7.7e-10 68.6 83 49.4
Gorai.004G082000 Gossypium raimondii HOM05D002055 ORTHO05D002120 7.7e-10 68.6 93 46.2
Thecc.01G282300 Theobroma cacao HOM05D002055 ORTHO05D002120 1.0e-09 68.2 89 47.2
CARHR251220 Cardamine hirsuta HOM05D002055 ORTHO05D002120 1.3e-09 67.8 120 42.5
Manes.05G074500 Manihot esculenta HOM05D002055 ORTHO05D002120 1.3e-09 67.8 117 41.9
COL.COLO4_09125 Corchorus olitorius HOM05D002055 ORTHO05D002120 1.7e-09 67.4 113 43.4
Gohir.A08G069000 Gossypium hirsutum HOM05D002055 ORTHO05D002120 1.7e-09 67.4 93 46.2
Gohir.A08G068900 Gossypium hirsutum HOM05D002055 ORTHO05D002120 2.2e-09 67.0 131 39.7
Aa31LG1G9300 Aethionema arabicum HOM05D002055 ORTHO05D002120 2.9e-09 66.6 97 48.5
PGR119G0992 Punica granatum HOM05D002055 ORTHO05D002120 3.8e-09 66.2 94 40.4
Haze_04731 Corylus avellana HOM05D002055 ORTHO05D002120 5.0e-09 65.9 113 38.9
QL12p022233 Quercus lobata HOM05D002055 ORTHO05D002120 6.5e-09 65.5 95 46.3
TPR.G1582 Trifolium pratense HOM05D002055 ORTHO05D002120 6.5e-09 65.5 115 39.1
Manes.05G074700 Manihot esculenta HOM05D002055 ORTHO05D002120 8.5e-09 65.1 87 43.7
Psat6g125880 Pisum sativum HOM05D002055 ORTHO05D002120 8.5e-09 65.1 139 37.4
Hund17989 Selenicereus undatus HOM05D002055 ORTHO05D002120 8.5e-09 65.1 121 33.9
Ciclev10021404m.g Citrus clementina HOM05D002055 ORTHO05D002120 1.9e-08 63.9 101 41.6
COL.COLO4_09126 Corchorus olitorius HOM05D002055 ORTHO05D002120 1.9e-08 63.9 105 41.0
Hma1.2p1_0628F.1_g192000 Hydrangea macrophylla HOM05D002055 ORTHO05D002120 1.9e-08 63.9 117 32.5
PGR119G0488 Punica granatum HOM05D002055 ORTHO05D002120 1.9e-08 63.9 140 35.0
QL12p022227 Quercus lobata HOM05D002055 ORTHO05D002120 1.9e-08 63.9 129 40.3
Atru.chr5.1391 Acer truncatum HOM05D002055 ORTHO05D002120 2.5e-08 63.5 84 48.8
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.5e-08 63.5 95 43.2
BcaB06g29434 Brassica carinata HOM05D005142 ORTHO05D006519 2.5e-08 63.5 39 87.2
Thhalv10001324m.g Eutrema salsugineum HOM05D005142 ORTHO05D006519 2.5e-08 63.5 39 84.6
Thecc.01G282200 Theobroma cacao HOM05D002055 ORTHO05D002120 2.5e-08 63.5 147 36.7
TPR.G1597 Trifolium pratense HOM05D002055 ORTHO05D002120 2.5e-08 63.5 117 39.3
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 3.2e-08 63.2 109 38.5
Lj2A1175T53 Lonicera japonica HOM05D002055 ORTHO05D002120 3.2e-08 63.2 88 40.9
Sp4g27670 Schrenkiella parvula HOM05D005142 ORTHO05D006519 3.2e-08 63.2 39 84.6
Duzib133G0902 Durio zibethinus HOM05D002055 ORTHO05D002120 4.2e-08 62.8 92 45.7
Lsat_1_v5_gn_5_190180 Lactuca sativa HOM05D002055 ORTHO05D002120 4.2e-08 62.8 111 41.4
Manes.01G209000 Manihot esculenta HOM05D002055 ORTHO05D002120 4.2e-08 62.8 92 42.4
Phvul.005G129900 Phaseolus vulgaris HOM05D002055 ORTHO05D002120 4.2e-08 62.8 90 40.0
A03p30790 Brassica napus HOM05D002055 ORTHO05D002120 5.5e-08 62.4 124 37.9
Ciclev10021398m.g Citrus clementina HOM05D002055 ORTHO05D002120 5.5e-08 62.4 101 41.6
Actinidia00742 Actinidia chinensis HOM05D002055 ORTHO05D002120 7.2e-08 62.0 89 42.7
C03p37480 Brassica napus HOM05D002055 ORTHO05D002120 7.2e-08 62.0 134 37.3
COL.COLO4_09127 Corchorus olitorius HOM05D002055 ORTHO05D002120 7.2e-08 62.0 135 37.0
Manes.01G183900 Manihot esculenta HOM05D002055 ORTHO05D002120 7.2e-08 62.0 132 37.9
THA.LOC104801228 Tarenaya hassleriana HOM05D002055 ORTHO05D002120 7.2e-08 62.0 134 38.1
Glyma.13G321500 Glycine max HOM05D002055 ORTHO05D002120 9.4e-08 61.6 110 36.4
Sabra10G0135400 Salix brachista HOM05D000146 ORTHO05D000178 9.4e-08 61.6 110 39.1
AUR62039910 Chenopodium quinoa HOM05D002055 ORTHO05D002120 1.2e-07 61.2 118 35.6
Manes.05G074600 Manihot esculenta HOM05D002055 ORTHO05D002120 1.2e-07 61.2 87 43.7
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 1.6e-07 60.8 113 45.1
BraA03t12257Z Brassica rapa HOM05D002055 ORTHO05D002120 1.6e-07 60.8 124 37.1
Medtr1g072500 Medicago truncatula HOM05D002055 ORTHO05D002120 1.6e-07 60.8 99 42.4
QL12p022188 Quercus lobata HOM05D002055 ORTHO05D002120 1.6e-07 60.8 132 37.1
GSVIVG01011114001 Vitis vinifera HOM05D002055 ORTHO05D002120 1.6e-07 60.8 116 34.5
HanXRQChr01g0002291 Helianthus annuus HOM05D002055 ORTHO05D002120 2.1e-07 60.5 110 38.2
arahy.Tifrunner.gnm1.ann1.17XFIN Arachis hypogaea HOM05D002055 ORTHO05D002120 2.7e-07 60.1 106 36.8
ECA248G2655 Erigeron canadensis HOM05D002055 ORTHO05D002120 3.6e-07 59.7 109 36.7
Hma1.2p1_0628F.1_g192010 Hydrangea macrophylla HOM05D002055 ORTHO05D002120 3.6e-07 59.7 119 31.9
Potri.010G175700 Populus trichocarpa HOM05D002055 ORTHO05D002120 3.6e-07 59.7 94 41.5
Dinv11247 Davidia involucrata HOM05D002055 ORTHO05D002120 4.7e-07 59.3 76 47.4
Potri.010G175701 Populus trichocarpa HOM05D002055 ORTHO05D002120 4.7e-07 59.3 95 43.2
QL12p022217 Quercus lobata HOM05D002055 ORTHO05D002120 4.7e-07 59.3 124 41.1
Rhsim13G0023600 Rhododendron simsii HOM05D002055 ORTHO05D002120 6.1e-07 58.9 94 37.2
Sc12g0003660 Simmondsia chinensis HOM05D002055 ORTHO05D002120 6.1e-07 58.9 77 44.2
VMungo0720G0847 Vigna mungo HOM05D002055 ORTHO05D002120 6.1e-07 58.9 90 43.3
Cfa006119 Carpinus fangiana HOM05D002055 ORTHO05D002120 8.0e-07 58.5 119 37.8
vmacro02558 Vaccinium macrocarpon HOM05D002055 ORTHO05D002120 8.0e-07 58.5 107 35.5
GSVIVG01011113001 Vitis vinifera HOM05D002055 ORTHO05D002120 8.0e-07 58.5 116 32.8
CARHR140840 Cardamine hirsuta HOM05D005142 ORTHO05D006519 1.0e-06 58.2 39 84.6
Cfa006120 Carpinus fangiana HOM05D002055 ORTHO05D002120 1.0e-06 58.2 126 37.3
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.0e-06 58.2 86 41.9
GSVIVG01011112001 Vitis vinifera HOM05D002055 ORTHO05D002120 1.0e-06 58.2 116 32.8
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 1.4e-06 57.8 113 44.2
CSS0012397 Camellia sinensis var. sinensis HOM05D002055 ORTHO05D002120 1.4e-06 57.8 104 39.4
CSS0027342 Camellia sinensis var. sinensis HOM05D002055 ORTHO05D002120 1.4e-06 57.8 104 39.4
MD03G1267500 Malus domestica HOM05D002055 ORTHO05D002120 1.4e-06 57.8 113 35.4
Ciclev10024334m.g Citrus clementina HOM05D002055 ORTHO05D002120 1.8e-06 57.4 86 43.0
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 1.8e-06 57.4 99 43.4
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.8e-06 57.4 90 43.3
Eucgr.C02457 Eucalyptus grandis HOM05D002055 ORTHO05D002120 2.3e-06 57.0 104 37.5
Phvul.007G170600 Phaseolus vulgaris HOM05D002055 ORTHO05D002120 2.3e-06 57.0 90 40.0
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 2.3e-06 57.0 94 41.5
RcHm_v2.0_Chr6g0291351 Rosa chinensis HOM05D002055 ORTHO05D002120 2.3e-06 57.0 139 31.7
Cpa.g.sc52.9 Carica papaya HOM05D002055 ORTHO05D002120 3.0e-06 56.6 101 42.6
Cc04_g02740 Coffea canephora HOM05D002055 ORTHO05D002120 3.0e-06 56.6 77 41.6
Lsat_1_v5_gn_5_190081 Lactuca sativa HOM05D002055 ORTHO05D002120 3.0e-06 56.6 118 34.7
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 4.0e-06 56.2 111 36.0
Eucgr.C02459 Eucalyptus grandis HOM05D002055 ORTHO05D002120 4.0e-06 56.2 114 34.2
Peaxi162Scf00570g00059 Petunia axillaris HOM05D002055 ORTHO05D002120 4.0e-06 56.2 107 34.6
Phvul.007G170400 Phaseolus vulgaris HOM05D002055 ORTHO05D002120 4.0e-06 56.2 90 41.1
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 4.0e-06 56.2 79 39.2
CSS0016865 Camellia sinensis var. sinensis HOM05D002055 ORTHO05D002120 5.2e-06 55.8 77 44.2
RcHm_v2.0_Chr6g0291361 Rosa chinensis HOM05D002055 ORTHO05D002120 5.2e-06 55.8 139 31.7
RcHm_v2.0_Chr6g0291371 Rosa chinensis HOM05D002055 ORTHO05D002120 5.2e-06 55.8 114 34.2
Eucgr.C01250 Eucalyptus grandis HOM05D002055 ORTHO05D002120 6.8e-06 55.5 104 36.5
Glyma.02G148400 Glycine max HOM05D002055 ORTHO05D002120 6.8e-06 55.5 91 39.6
Phvul.007G170800 Phaseolus vulgaris HOM05D002055 ORTHO05D002120 6.8e-06 55.5 121 35.5
Prupe.8G243300 Prunus persica HOM05D002055 ORTHO05D002120 6.8e-06 55.5 101 37.6
arahy.Tifrunner.gnm1.ann1.K2G5V4 Arachis hypogaea HOM05D002055 ORTHO05D002120 8.8e-06 55.1 106 34.9
BcaC02g11409 Brassica carinata HOM05D002272 ORTHO05D019870 8.8e-06 55.1 29 100.0
Ciclev10021390m.g Citrus clementina HOM05D002055 ORTHO05D002120 8.8e-06 55.1 86 41.9
Prupe.8G243200 Prunus persica HOM05D002055 ORTHO05D002120 8.8e-06 55.1 101 37.6
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 8.8e-06 55.1 92 40.2
TPR.G1579 Trifolium pratense HOM05D002055 ORTHO05D002120 8.8e-06 55.1 95 41.1


User provided reference genes

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