Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10027 Brassica carinata HOM05D003004 ORTHO05D003860 3.9e-131 471.5 237 100.0
C04p33750 Brassica napus HOM05D003004 ORTHO05D003860 4.9e-110 401.4 238 87.8
BolC4t24943H Brassica oleracea HOM05D003004 ORTHO05D003860 4.9e-110 401.4 238 87.8
BraA04t15967Z Brassica rapa HOM05D003004 ORTHO05D003860 2.2e-102 375.9 238 82.8
A04p02380 Brassica napus HOM05D003004 ORTHO05D003860 1.0e-99 367.1 238 81.5
A09p51290 Brassica napus HOM05D003004 ORTHO05D003860 1.1e-90 337.0 240 75.4
BolC8t51005H Brassica oleracea HOM05D003004 ORTHO05D003860 1.3e-89 333.6 240 74.6
Sp5g04110 Schrenkiella parvula HOM05D003004 ORTHO05D003860 1.7e-89 333.2 244 73.8
BcaB02g07501 Brassica carinata HOM05D003004 ORTHO05D003860 2.8e-89 332.4 243 72.4
BcaC07g40293 Brassica carinata HOM05D003004 ORTHO05D003860 6.3e-89 331.3 240 74.2
C08p34070 Brassica napus HOM05D003004 ORTHO05D003860 6.3e-89 331.3 240 74.2
Sp5g04090 Schrenkiella parvula HOM05D003004 ORTHO05D003860 6.3e-89 331.3 242 72.7
Sp5g04100 Schrenkiella parvula HOM05D003004 ORTHO05D003860 1.1e-88 330.5 245 71.4
A07p24330 Brassica napus HOM05D003004 ORTHO05D003860 2.4e-88 329.3 245 71.8
C08p34090 Brassica napus HOM05D003004 ORTHO05D003860 2.4e-88 329.3 243 72.8
BolC8t51008H Brassica oleracea HOM05D003004 ORTHO05D003860 2.4e-88 329.3 243 72.0
C06p25730 Brassica napus HOM05D003004 ORTHO05D003860 3.1e-88 328.9 243 71.2
BolC6t37735H Brassica oleracea HOM05D003004 ORTHO05D003860 3.1e-88 328.9 243 71.2
Thhalv10005906m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 5.3e-88 328.2 241 73.0
Thhalv10006483m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 9.1e-88 327.4 242 73.6
BcaC07g40223 Brassica carinata HOM05D003004 ORTHO05D003860 2.6e-87 325.9 238 72.3
AL5G40520 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 3.2e-85 318.9 241 70.1
BraA07t30079Z Brassica rapa HOM05D003004 ORTHO05D003860 4.2e-85 318.5 242 69.8
CARHR169140 Cardamine hirsuta HOM05D003004 ORTHO05D003860 5.5e-85 318.2 241 70.5
AT3G58750 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 1.6e-84 316.6 241 69.7
Carub.0005s2554 Capsella rubella HOM05D003004 ORTHO05D003860 1.6e-84 316.6 241 69.7
AT3G58740 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 1.8e-83 313.2 239 70.3
BcaC07g40224 Brassica carinata HOM05D003004 ORTHO05D003860 1.8e-83 313.2 243 70.0
A09p51310 Brassica napus HOM05D003004 ORTHO05D003860 3.9e-83 312.0 243 70.8
BraA09t40572Z Brassica rapa HOM05D003004 ORTHO05D003860 5.1e-83 311.6 243 70.8
THA.LOC104802267 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 6.7e-83 311.2 235 68.9
THA.LOC104803095 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 6.7e-83 311.2 231 69.7
AL5G40510 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 9.7e-82 307.4 239 68.6
Carub.0004s2523 Capsella rubella HOM05D003004 ORTHO05D003860 2.2e-81 306.2 242 68.6
AL4G41400 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 4.1e-80 302.0 239 68.2
AT2G42790 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 7.0e-80 301.2 239 67.8
CARHR137870 Cardamine hirsuta HOM05D003004 ORTHO05D003860 1.2e-79 300.4 239 66.9
Manes.02G086900 Manihot esculenta HOM05D003004 ORTHO05D003860 2.0e-79 299.7 230 65.7
Ciclev10014944m.g Citrus clementina HOM05D003004 ORTHO05D003860 2.6e-79 299.3 232 68.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.5e-79 298.9 245 64.1
FvH4_6g37750 Fragaria vesca HOM05D003004 ORTHO05D003860 4.5e-79 298.5 234 66.2
Sp4g24910 Schrenkiella parvula HOM05D003004 ORTHO05D003860 4.5e-79 298.5 243 66.7
C08p34080 Brassica napus HOM05D003004 ORTHO05D003860 5.9e-79 298.1 236 67.8
Manes.01G129000 Manihot esculenta HOM05D003004 ORTHO05D003860 7.7e-79 297.7 230 66.1
A05p03250 Brassica napus HOM05D003004 ORTHO05D003860 1.3e-78 297.0 241 65.6
BraA05t19314Z Brassica rapa HOM05D003004 ORTHO05D003860 1.3e-78 297.0 241 65.6
FAN05G0272 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.8e-78 295.4 234 65.4
Prupe.3G169400 Prunus persica HOM05D003004 ORTHO05D003860 3.8e-78 295.4 235 67.2
Aa31LG1G24550 Aethionema arabicum HOM05D003004 ORTHO05D003860 1.1e-77 293.9 239 65.7
Gohir.A11G059700 Gossypium hirsutum HOM05D003004 ORTHO05D003860 1.9e-77 293.1 235 66.4
ClCG02G018250 Citrullus lanatus HOM05D003004 ORTHO05D003860 2.5e-77 292.7 232 67.2
Thecc.01G158700 Theobroma cacao HOM05D003004 ORTHO05D003860 2.5e-77 292.7 235 66.0
C04p03890 Brassica napus HOM05D003004 ORTHO05D003860 3.2e-77 292.4 241 65.1
BolC4t22025H Brassica oleracea HOM05D003004 ORTHO05D003860 3.2e-77 292.4 241 65.1
COL.COLO4_33706 Corchorus olitorius HOM05D003004 ORTHO05D003860 3.2e-77 292.4 235 66.0
Duzib147G1628 Durio zibethinus HOM05D003004 ORTHO05D003860 4.2e-77 292.0 237 66.2
CSS0027416 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 5.5e-77 291.6 234 66.2
MD17G1142900 Malus domestica HOM05D003004 ORTHO05D003860 9.4e-77 290.8 233 65.2
Rhsim06G0122300 Rhododendron simsii HOM05D003004 ORTHO05D003860 1.2e-76 290.4 234 66.7
RcHm_v2.0_Chr2g0150811 Rosa chinensis HOM05D003004 ORTHO05D003860 1.2e-76 290.4 234 64.1
CSS0034735 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 1.6e-76 290.0 234 65.8
MELO3C019711.2 Cucumis melo HOM05D003004 ORTHO05D003860 2.1e-76 289.7 236 65.7
Gohir.D11G063800 Gossypium hirsutum HOM05D003004 ORTHO05D003860 2.1e-76 289.7 235 65.5
QL08p043421 Quercus lobata HOM05D003004 ORTHO05D003860 2.1e-76 289.7 237 64.6
Atru.chr6.3557 Acer truncatum HOM05D003004 ORTHO05D003860 2.7e-76 289.3 240 65.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.7e-76 289.3 234 65.4
GSVIVG01000817001 Vitis vinifera HOM05D003004 ORTHO05D003860 2.7e-76 289.3 235 65.1
Actinidia11186 Actinidia chinensis HOM05D003004 ORTHO05D003860 3.6e-76 288.9 237 65.4
Gorai.007G069000 Gossypium raimondii HOM05D003004 ORTHO05D003860 3.6e-76 288.9 235 65.5
CsaV3_6G015630 Cucumis sativus L. HOM05D003004 ORTHO05D003860 1.4e-75 287.0 235 65.5
Eucgr.A01955 Eucalyptus grandis HOM05D003004 ORTHO05D003860 1.8e-75 286.6 246 63.4
MD09G1156400 Malus domestica HOM05D003004 ORTHO05D003860 1.8e-75 286.6 235 64.7
TAR626G0830 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.8e-75 286.6 234 65.4
Thhalv10016536m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 2.3e-75 286.2 241 63.9
Nn3g21011 Nelumbo nucifera HOM05D003004 ORTHO05D003860 2.3e-75 286.2 233 66.5
CiPaw.03G195600 Carya illinoinensis HOM05D003004 ORTHO05D003860 3.0e-75 285.8 234 65.0
TAR629G1040 Trochodendron aralioides HOM05D003004 ORTHO05D003860 3.0e-75 285.8 235 66.0
Dinv12715 Davidia involucrata HOM05D003004 ORTHO05D003860 3.9e-75 285.4 234 65.4
CiPaw.04G135400 Carya illinoinensis HOM05D003004 ORTHO05D003860 5.2e-75 285.0 234 65.0
Hma1.2p1_0178F.1_g078210 Hydrangea macrophylla HOM05D003004 ORTHO05D003860 6.7e-75 284.6 240 64.6
Potri.016G089300 Populus trichocarpa HOM05D003004 ORTHO05D003860 6.7e-75 284.6 235 64.7
SalBow7G4649 Salvia bowleyana HOM05D003004 ORTHO05D003860 8.8e-75 284.3 231 66.2
Sed0011166 Sechium edule HOM05D003004 ORTHO05D003860 1.1e-74 283.9 236 65.7
Sed0013377 Sechium edule HOM05D003004 ORTHO05D003860 2.0e-74 283.1 238 64.7
Cpa.g.sc50.64 Carica papaya HOM05D003004 ORTHO05D003860 3.3e-74 282.3 230 65.7
PSO170G1739 Papaver somniferum HOM05D003004 ORTHO05D003860 3.3e-74 282.3 235 64.3
PSO528G0280 Papaver somniferum HOM05D003004 ORTHO05D003860 3.3e-74 282.3 235 64.7
Hund00825 Selenicereus undatus HOM05D003004 ORTHO05D003860 3.3e-74 282.3 235 65.1
Lsat_1_v5_gn_8_31881 Lactuca sativa HOM05D003004 ORTHO05D003860 4.4e-74 282.0 234 64.1
Sopen12g006360 Solanum pennellii HOM05D003004 ORTHO05D003860 5.7e-74 281.6 239 65.3
Dinv26515 Davidia involucrata HOM05D003004 ORTHO05D003860 7.4e-74 281.2 234 64.5
PGR042G3476 Punica granatum HOM05D003004 ORTHO05D003860 7.4e-74 281.2 236 63.6
Potri.014G141900 Populus trichocarpa HOM05D003004 ORTHO05D003860 9.7e-74 280.8 239 62.3
HanXRQChr13g0386841 Helianthus annuus HOM05D003004 ORTHO05D003860 1.3e-73 280.4 234 65.0
Peaxi162Scf00807g00038 Petunia axillaris HOM05D003004 ORTHO05D003860 1.3e-73 280.4 233 64.8
Solyc12g011000.2 Solanum lycopersicum HOM05D003004 ORTHO05D003860 1.3e-73 280.4 239 64.9
Lj1A586T32 Lonicera japonica HOM05D003004 ORTHO05D003860 1.7e-73 280.0 235 64.3
PGSC0003DMG400007797 Solanum tuberosum HOM05D003004 ORTHO05D003860 1.7e-73 280.0 239 64.9
TAR627G0638 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.7e-73 280.0 234 64.1
MSTRG.14300 Avicennia marina HOM05D003004 ORTHO05D003860 2.2e-73 279.6 235 65.1
BraA09t40570Z Brassica rapa HOM05D003004 ORTHO05D003860 2.8e-73 279.3 229 67.2
Migut.M00216 Erythranthe guttata HOM05D003004 ORTHO05D003860 2.8e-73 279.3 236 65.3
AUR62024005 Chenopodium quinoa HOM05D003004 ORTHO05D003860 3.7e-73 278.9 239 62.8
Sc12g0003790 Simmondsia chinensis HOM05D003004 ORTHO05D003860 4.8e-73 278.5 240 62.5
SGA_v2.0_scaffold9G04895 Striga asiatica HOM05D003004 ORTHO05D003860 6.3e-73 278.1 235 62.6
TWI14G0060 Tripterygium wilfordii HOM05D003004 ORTHO05D003860 6.3e-73 278.1 238 63.0
Cc05_g09160 Coffea canephora HOM05D003004 ORTHO05D003860 8.2e-73 277.7 240 62.9
Sabra14G0107100 Salix brachista HOM05D003004 ORTHO05D003860 1.4e-72 276.9 239 61.1
DCAR_009790 Daucus carota HOM05D003004 ORTHO05D003860 2.4e-72 276.2 232 62.1
HanXRQChr12g0367491 Helianthus annuus HOM05D003004 ORTHO05D003860 2.4e-72 276.2 236 62.7
MBI06_g08524_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 2.4e-72 276.2 233 63.5
AUR62036394 Chenopodium quinoa HOM05D003004 ORTHO05D003860 3.1e-72 275.8 239 63.2
SalBow7G3774 Salvia bowleyana HOM05D003004 ORTHO05D003860 3.1e-72 275.8 234 63.2
unitig_746.g26658 Utricularia gibba HOM05D003004 ORTHO05D003860 9.1e-72 274.2 231 64.9
CDE10G1091 Ceratophyllum demersum HOM05D003004 ORTHO05D003860 1.2e-71 273.9 233 63.9
ECA233G2966 Erigeron canadensis HOM05D003004 ORTHO05D003860 1.2e-71 273.9 235 62.6
SalBow7G3009 Salvia bowleyana HOM05D003004 ORTHO05D003860 1.2e-71 273.9 234 62.8
Aqoxy1G01921 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 1.6e-71 273.5 241 61.8
MSTRG.6769 Avicennia marina HOM05D003004 ORTHO05D003860 2.6e-71 272.7 234 63.2
Ca_14627_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 2.6e-71 272.7 232 63.4
Ca_30924_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 2.6e-71 272.7 232 63.4
Aqoxy4G00197 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 5.9e-71 271.6 238 62.2
PGSC0003DMG400017338 Solanum tuberosum HOM05D003004 ORTHO05D003860 1.7e-70 270.0 234 60.3
TPR.G20717 Trifolium pratense HOM05D003004 ORTHO05D003860 1.7e-70 270.0 232 62.1
Peaxi162Scf00154g00814 Petunia axillaris HOM05D003004 ORTHO05D003860 3.8e-70 268.9 242 59.5
Medtr5g091930 Medicago truncatula HOM05D003004 ORTHO05D003860 6.5e-70 268.1 238 58.8
Solyc07g055840.3 Solanum lycopersicum HOM05D003004 ORTHO05D003860 8.5e-70 267.7 245 59.6
Zm00001eb239300 Zea mays HOM05D003004 ORTHO05D003860 8.5e-70 267.7 231 63.6
EL10Ac9g21023 Beta vulgaris HOM05D003004 ORTHO05D003860 1.9e-69 266.5 251 59.8
Psat0s4248g0040 Pisum sativum HOM05D003004 ORTHO05D003860 1.9e-69 266.5 234 62.0
Glyma.14G026400 Glycine max HOM05D003004 ORTHO05D003860 2.5e-69 266.2 233 60.1
Lj6g0001020 Lotus japonicus HOM05D003004 ORTHO05D003860 2.5e-69 266.2 230 61.3
Os02g0232400 Oryza sativa ssp. japonica HOM05D003004 ORTHO05D003860 2.5e-69 266.2 231 62.3
arahy.Tifrunner.gnm1.ann1.6YST69 Arachis hypogaea HOM05D003004 ORTHO05D003860 3.2e-69 265.8 231 59.3
arahy.Tifrunner.gnm1.ann1.H9U4YS Arachis hypogaea HOM05D003004 ORTHO05D003860 3.2e-69 265.8 231 59.3
ATR0213G001 Amborella trichopoda HOM05D003004 ORTHO05D003860 9.4e-69 264.2 200 65.5
Glyma.02G288500 Glycine max HOM05D003004 ORTHO05D003860 9.4e-69 264.2 230 59.1
Sopen07g029210 Solanum pennellii HOM05D003004 ORTHO05D003860 1.2e-68 263.8 205 66.3
LjContig00310g0022930 Lotus japonicus HOM05D003004 ORTHO05D003860 2.7e-68 262.7 237 58.2
Medtr3g048920 Medicago truncatula HOM05D003004 ORTHO05D003860 4.7e-68 261.9 234 59.8
Lalb_Chr10g0106821 Lupinus albus HOM05D003004 ORTHO05D003860 6.1e-68 261.5 232 59.9
VMungo0647G1404 Vigna mungo HOM05D003004 ORTHO05D003860 1.4e-67 260.4 230 59.1
Phvul.006G035500 Phaseolus vulgaris HOM05D003004 ORTHO05D003860 6.8e-67 258.1 230 60.0
arahy.Tifrunner.gnm1.ann1.7SJ9JV Arachis hypogaea HOM05D003004 ORTHO05D003860 2.0e-66 256.5 233 60.1
Glyma.08G311200 Glycine max HOM05D003004 ORTHO05D003860 2.6e-66 256.1 231 59.3
Oeu026478.3 Olea europaea HOM05D003004 ORTHO05D003860 2.6e-66 256.1 316 49.1
HPP92_006375 Vanilla planifolia HOM05D003004 ORTHO05D003860 4.4e-66 255.4 242 58.3
Ah.01g004780 Amaranthus hybridus HOM05D003004 ORTHO05D003860 5.7e-66 255.0 237 61.2
Sabra16G0095100 Salix brachista HOM05D003004 ORTHO05D003860 7.5e-66 254.6 256 55.9
TPR.G12698 Trifolium pratense HOM05D003004 ORTHO05D003860 7.5e-66 254.6 237 57.0
TPR.G13562 Trifolium pratense HOM05D003004 ORTHO05D003860 7.5e-66 254.6 181 70.7
Glyma.18G104400 Glycine max HOM05D003004 ORTHO05D003860 1.3e-65 253.8 231 57.6
Lalb_Chr04g0248661 Lupinus albus HOM05D003004 ORTHO05D003860 1.7e-65 253.4 243 56.4
CAN.G1481.12 Capsicum annuum HOM05D003004 ORTHO05D003860 2.2e-65 253.1 155 78.7
CARHR169120 Cardamine hirsuta HOM05D003004 ORTHO05D003860 1.1e-64 250.8 156 76.9
CARHR169130 Cardamine hirsuta HOM05D003004 ORTHO05D003860 9.1e-64 247.7 154 79.9
vmacro12433 Vaccinium macrocarpon HOM05D003004 ORTHO05D003860 1.2e-63 247.3 202 64.4
Nitab4.5_0005521g0030 Nicotiana tabacum HOM05D003004 ORTHO05D003860 1.6e-63 246.9 233 60.1
SGA_v2.0_scaffold538G52785 Striga asiatica HOM05D003004 ORTHO05D003860 1.6e-63 246.9 297 49.8
SMO367G0491 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 9.4e-61 237.7 234 56.0
MBI07_g00476_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 1.6e-60 236.9 217 60.8
arahy.Tifrunner.gnm1.ann1.7JY60E Arachis hypogaea HOM05D003004 ORTHO05D003860 1.0e-59 234.2 235 56.6
Nitab4.5_0010286g0010 Nicotiana tabacum HOM05D003004 ORTHO05D003860 1.0e-59 234.2 214 59.8
Pp3c12_7740 Physcomitrium patens HOM05D003004 ORTHO05D003860 1.5e-58 230.3 231 52.8
VMungo0540G1035 Vigna mungo HOM05D003004 ORTHO05D003860 1.5e-58 230.3 152 73.0
Mapoly0091s0007 Marchantia polymorpha HOM05D003004 ORTHO05D003860 2.2e-57 226.5 230 53.5
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis HOM05D003004 ORTHO05D003860 7.0e-56 221.5 235 52.8
Pp3c23_9030 Physcomitrium patens HOM05D003004 ORTHO05D003860 2.8e-52 209.5 231 49.4
CBR_g4482 Chara braunii HOM05D003004 ORTHO05D003860 2.3e-51 206.5 155 61.9
Mapoly0111s0039 Marchantia polymorpha HOM05D003004 ORTHO05D003860 4.4e-50 202.2 230 49.1
QL07p013989 Quercus lobata HOM05D003004 ORTHO05D003860 4.4e-50 202.2 194 58.2
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.3e-49 198.0 150 68.7
MCO05G529 Micromonas commoda HOM05D003004 ORTHO05D003860 1.8e-48 196.8 222 45.9
PRCOL_00002388 Prasinoderma coloniale HOM05D003004 ORTHO05D003860 8.6e-46 188.0 196 47.4
Cre03.g149100 Chlamydomonas reinhardtii HOM05D003004 ORTHO05D003860 2.5e-45 186.4 201 47.8
SMO115G0153 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 1.7e-41 173.7 172 50.6
Carub.0005s2553 Capsella rubella HOM05D003004 ORTHO05D003860 1.5e-37 160.6 147 63.3
Ca_06295_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 1.5e-29 134.0 138 49.3
SMO115G0146 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 9.9e-26 121.3 199 35.7
CAN.G486.12 Capsicum annuum HOM05D003004 ORTHO05D003860 1.7e-22 110.5 60 86.7
Haze_26743 Corylus avellana HOM05D003004 ORTHO05D028858 1.1e-21 107.8 157 36.3
CAN.G486.13 Capsicum annuum HOM05D003004 ORTHO05D003860 4.9e-17 92.4 60 75.0
Haze_13470 Corylus avellana HOM05D003004 ORTHO05D003860 1.1e-16 91.3 60 73.3
PRCOL_00005692 Prasinoderma coloniale HOM05D003004 ORTHO05D028858 4.2e-16 89.4 151 34.4
BraA09t40571Z Brassica rapa HOM05D003004 ORTHO05D003860 1.5e-10 70.9 46 76.1
COL.COLO4_30244 Corchorus olitorius HOM05D003004 ORTHO05D003860 4.4e-10 69.3 40 82.5
PRCOL_00003102 Prasinoderma coloniale HOM05D003004 ORTHO05D003860 2.2e-09 67.0 76 40.8


User provided reference genes

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