Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 1.4e-101 373.6 302 100.0
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.5e-87 327.0 277 100.0
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 2.6e-87 326.2 297 75.4
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 1.3e-86 323.9 297 79.8
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 6.3e-86 321.6 297 75.1
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 2.0e-84 316.6 297 81.5
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 2.7e-84 316.2 297 90.9
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 5.9e-84 315.1 277 97.8
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 1.7e-83 313.5 297 88.6
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 2.3e-83 313.2 297 78.5
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 5.6e-82 308.5 297 90.2
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 6.4e-78 295.0 296 86.8
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 1.8e-77 293.5 296 70.3
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 3.5e-76 289.3 277 74.4
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 2.5e-74 283.1 278 78.4
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 1.6e-73 280.4 297 67.0
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.5e-66 256.5 297 65.0
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 2.0e-63 246.9 296 70.3
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 2.6e-63 246.5 296 70.6
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 2.6e-63 246.5 296 66.9
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 3.4e-63 246.1 296 61.1
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 5.8e-63 245.4 296 70.3
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.3e-62 244.2 296 47.0
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.7e-62 243.8 297 66.3
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 2.2e-62 243.4 296 70.3
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.9e-62 242.3 296 69.9
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 6.4e-62 241.9 296 69.6
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 8.3e-62 241.5 300 69.7
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.4e-61 240.0 296 70.3
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 4.1e-61 239.2 293 70.3
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.2e-60 237.7 296 68.9
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.6e-60 237.3 296 69.6
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.7e-60 236.5 296 69.6
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 3.5e-60 236.1 296 57.1
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 6.0e-60 235.3 296 54.1
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.0e-59 234.6 302 68.5
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.3e-59 234.2 296 68.2
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 6.6e-59 231.9 313 66.8
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 6.6e-59 231.9 295 66.8
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.9e-58 230.3 296 67.9
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 7.3e-58 228.4 297 76.1
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 1.2e-57 227.6 296 67.6
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 1.6e-57 227.3 297 67.3
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 2.1e-57 226.9 296 56.4
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 2.8e-57 226.5 297 76.8
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 8.1e-57 224.9 297 66.7
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 8.1e-57 224.9 304 73.0
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 1.1e-56 224.6 297 76.1
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 4.0e-56 222.6 296 66.9
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.1e-53 214.5 296 65.5
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 1.9e-53 213.8 285 63.2
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 3.2e-53 213.0 296 43.9
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 2.1e-52 210.3 325 61.5
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 3.5e-52 209.5 280 57.9
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 1.3e-51 207.6 296 65.9
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 3.3e-50 203.0 296 64.5
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 7.3e-50 201.8 296 63.2
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 1.6e-49 200.7 296 63.9
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.8e-48 197.2 274 75.9
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 2.0e-47 193.7 297 51.9
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 3.4e-47 193.0 297 53.5
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 5.8e-47 192.2 274 59.5
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 2.2e-46 190.3 296 61.5
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.1e-45 188.0 229 76.0
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.9e-45 187.2 296 61.5
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 3.2e-45 186.4 296 58.1
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 4.6e-44 182.6 296 60.8
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 7.8e-44 181.8 296 68.6
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 7.8e-44 181.8 296 68.6
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 7.8e-44 181.8 296 62.8
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 1.7e-43 180.6 296 59.5
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 3.0e-43 179.9 229 75.5
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 7.3e-42 175.3 296 55.7
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 6.2e-41 172.2 229 69.4
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 8.1e-41 171.8 296 52.0
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 1.8e-40 170.6 296 60.8
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 1.2e-39 167.9 296 67.9
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 2.0e-39 167.2 296 59.5
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 2.0e-39 167.2 349 45.3
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 2.6e-39 166.8 288 61.1
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 5.8e-39 165.6 296 58.8
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 1.3e-38 164.5 354 34.2
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 1.3e-38 164.5 354 34.2
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 2.9e-38 163.3 231 71.9
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 3.8e-38 162.9 297 58.9
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 4.9e-38 162.5 306 59.5
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 4.9e-38 162.5 322 34.2
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 8.4e-38 161.8 292 58.6
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.4e-37 161.0 274 36.5
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 1.4e-37 161.0 296 58.8
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 3.2e-37 159.8 296 60.1
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 2.5e-34 150.2 297 59.9
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.3e-33 147.9 274 47.4
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 3.6e-33 146.4 229 57.2
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 2.6e-31 140.2 296 54.7
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 7.6e-31 138.7 292 32.5
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 2.4e-29 133.7 296 39.2
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 5.6e-26 122.5 131 67.9
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 9.6e-26 121.7 123 51.2
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 4.8e-25 119.4 93 61.3
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.4e-24 117.9 92 60.9
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.5e-23 114.4 362 26.8
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 3.4e-23 113.2 301 52.2
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 1.3e-22 111.3 85 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 2.9e-22 110.2 296 49.0
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 4.9e-22 109.4 111 75.7
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 1.1e-21 108.2 205 67.8
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 1.9e-21 107.5 288 52.4
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 2.7e-20 103.6 92 53.3
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 2.4e-16 90.5 137 42.3
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 2.4e-16 90.5 137 42.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 1.5e-15 87.8 129 41.1
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.4e-13 81.3 273 24.9


User provided reference genes

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