Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 6.4e-76 287.3 145 100.0
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 4.3e-64 248.1 148 81.8
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 4.4e-61 238.0 145 80.7
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 2.1e-58 229.2 115 100.0
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 1.0e-57 226.9 115 99.1
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.0e-53 212.6 145 73.8
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 7.6e-53 210.7 145 73.1
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.1e-51 206.8 115 86.1
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.1e-51 206.8 115 86.1
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 3.1e-46 188.7 126 73.8
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 4.0e-46 188.3 144 67.4
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 2.7e-42 175.6 145 64.8
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 4.2e-35 151.8 124 55.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 4.6e-34 148.3 121 58.7
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 3.0e-33 145.6 127 57.5
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 3.0e-33 145.6 138 54.3
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 3.9e-33 145.2 118 58.5
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 6.7e-33 144.4 139 51.8
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.1e-32 143.7 131 55.0
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 1.9e-32 142.9 120 58.3
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 2.5e-32 142.5 141 49.6
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 4.3e-32 141.7 122 56.6
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 4.3e-32 141.7 122 56.6
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 4.3e-32 141.7 144 51.4
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 7.4e-32 141.0 139 52.5
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 9.6e-32 140.6 132 55.3
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 1.3e-31 140.2 132 52.3
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.3e-31 140.2 122 56.6
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 2.8e-31 139.0 114 58.8
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 2.8e-31 139.0 131 52.7
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 3.7e-31 138.7 129 51.9
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 8.1e-31 137.5 142 50.0
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.1e-30 137.1 134 50.0
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.1e-30 137.1 131 51.9
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 1.8e-30 136.3 131 51.9
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 3.1e-30 135.6 119 54.6
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 5.3e-30 134.8 114 54.4
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 6.9e-30 134.4 131 51.9
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 9.0e-30 134.0 134 47.0
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.5e-29 133.3 131 51.9
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 3.4e-29 132.1 152 44.1
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 4.5e-29 131.7 124 52.4
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 4.5e-29 131.7 135 49.6
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.8e-29 131.3 119 52.1
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 7.6e-29 131.0 133 46.6
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 9.9e-29 130.6 127 52.8
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.2e-28 129.4 142 46.5
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 2.2e-28 129.4 132 47.7
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 2.9e-28 129.0 140 50.0
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 2.9e-28 129.0 137 46.7
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 2.9e-28 129.0 127 51.2
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 4.9e-28 128.3 142 45.1
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 4.9e-28 128.3 124 46.8
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 4.9e-28 128.3 139 42.4
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 6.4e-28 127.9 130 50.8
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 6.4e-28 127.9 117 53.8
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 6.4e-28 127.9 114 50.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 8.4e-28 127.5 134 49.3
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 1.4e-27 126.7 117 53.0
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.4e-27 126.7 131 46.6
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.4e-27 126.7 134 46.3
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.4e-27 126.7 147 44.9
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 1.4e-27 126.7 147 44.9
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.4e-27 126.7 125 51.2
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 5.5e-27 124.8 125 48.8
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.7e-26 122.5 127 49.6
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.7e-26 122.5 120 50.0
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 2.7e-26 122.5 139 44.6
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 2.7e-26 122.5 120 50.8
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 2.7e-26 122.5 138 43.5
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.5e-26 122.1 126 46.8
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 4.6e-26 121.7 120 50.0
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 6.0e-26 121.3 114 50.0
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 6.0e-26 121.3 147 43.5
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 7.9e-26 120.9 120 50.0
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.9e-26 120.9 120 50.0
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.0e-25 120.6 142 45.1
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.3e-25 120.2 120 49.2
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.3e-25 120.2 125 49.6
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.3e-25 120.2 133 45.1
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.3e-25 120.2 175 37.1
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.8e-25 119.8 125 49.6
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.8e-25 119.8 133 45.1
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 3.0e-25 119.0 129 45.7
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 3.9e-25 118.6 118 49.2
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 5.1e-25 118.2 128 44.5
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 6.7e-25 117.9 124 44.4
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 6.7e-25 117.9 124 44.4
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 8.7e-25 117.5 123 47.2
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.6e-23 113.2 116 46.6
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 6.2e-23 111.3 140 42.1
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 8.2e-23 110.9 126 43.7
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.1e-22 110.5 114 50.0
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.8e-22 109.8 163 41.7
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 6.9e-22 107.8 127 41.7
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 6.9e-22 107.8 68 69.1
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.6e-21 105.9 107 48.6
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 6.5e-20 101.3 118 42.4
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.5e-19 99.4 113 44.2
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 4.2e-19 98.6 109 46.8
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 9.3e-19 97.4 107 41.1
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.1e-18 96.3 124 41.9
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 4.6e-18 95.1 117 42.7
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 7.9e-18 94.4 120 44.2
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 7.9e-18 94.4 83 50.6
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.0e-17 92.4 106 42.5
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 2.5e-16 89.4 80 52.5
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 4.1e-14 82.0 77 46.8
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 3.9e-09 65.5 92 44.6
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.3e-07 60.5 56 50.0
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.7e-07 60.1 52 53.8
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.7e-07 60.1 73 43.8
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 6.3e-07 58.2 59 47.5
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 2.4e-06 56.2 56 51.8


User provided reference genes

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