Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.9e-162 575.9 303 100.0
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.9e-162 575.9 303 100.0
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 8.7e-160 567.0 303 98.7
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.8e-152 542.7 303 95.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.8e-152 542.7 303 95.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 3.3e-151 538.5 303 95.0
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.8e-139 498.4 307 87.0
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.0e-136 490.3 310 85.5
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.0e-136 488.8 310 83.9
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.9e-136 488.4 307 84.4
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.1e-133 480.3 312 84.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 2.4e-133 479.2 312 82.7
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.6e-119 432.6 304 75.0
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.5e-111 406.8 313 72.8
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.7e-111 404.8 303 72.3
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.3e-110 403.7 305 72.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.7e-110 402.1 306 71.9
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.4e-109 400.2 306 71.9
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.1e-109 398.7 295 72.2
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 3.5e-108 395.6 296 69.9
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 2.2e-107 392.9 298 71.1
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 3.8e-107 392.1 298 70.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 3.8e-107 392.1 298 70.5
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.9e-106 389.8 296 69.9
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.2e-106 389.0 308 68.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 3.6e-105 385.6 297 69.0
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-104 383.6 300 67.3
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.7e-99 366.7 295 63.4
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.3e-99 366.3 309 61.2
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 5.0e-99 365.2 305 63.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.5e-98 363.6 305 62.3
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.1e-97 359.8 300 62.0
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.1e-97 359.8 308 61.4
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.8e-97 359.4 311 61.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.8e-97 359.4 311 61.1
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 6.1e-97 358.2 306 61.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 6.1e-97 358.2 300 61.3
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.0e-97 357.8 311 60.8
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.8e-96 356.7 311 61.4
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.8e-96 356.7 309 60.5
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 3.0e-96 355.9 294 62.6
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 5.2e-96 355.1 296 62.5
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.2e-95 354.0 296 62.2
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.5e-95 353.6 301 62.5
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.5e-95 353.6 304 60.5
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.5e-95 353.6 266 65.0
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.6e-95 352.8 293 63.8
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.6e-95 352.8 309 59.5
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.4e-95 352.1 302 60.3
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 9.8e-95 350.9 304 61.5
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.4e-93 347.1 314 59.6
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.8e-93 346.7 269 74.3
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.8e-93 346.7 315 60.3
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.4e-93 346.3 319 60.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.4e-93 346.3 298 59.7
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.1e-93 345.9 266 63.2
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.1e-93 345.9 260 64.6
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 4.1e-93 345.5 258 64.7
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 5.4e-93 345.1 265 65.7
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 5.4e-93 345.1 298 62.1
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 9.2e-93 344.4 294 59.9
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.6e-92 343.6 297 59.6
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.7e-92 342.8 291 58.8
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.7e-92 342.8 331 56.5
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 7.8e-92 341.3 284 60.6
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 7.8e-92 341.3 280 62.9
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.3e-91 339.7 283 59.7
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.3e-91 339.7 253 65.2
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.0e-91 338.6 293 59.7
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 8.6e-91 337.8 223 81.6
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.1e-90 337.4 260 65.8
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.1e-90 337.4 286 59.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.9e-90 336.7 258 64.7
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.5e-90 336.3 291 59.1
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.3e-90 335.9 258 64.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 4.3e-90 335.5 253 64.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 7.3e-90 334.7 303 58.7
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 9.5e-90 334.3 257 63.4
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.6e-89 332.4 311 58.2
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 6.1e-89 331.6 277 62.1
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 8.9e-88 327.8 306 57.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.2e-87 327.4 286 58.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-87 327.4 267 60.7
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-87 327.4 267 60.7
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.6e-87 326.2 305 57.4
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.6e-87 326.2 253 64.8
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.4e-87 325.9 306 56.5
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 9.8e-87 324.3 253 62.5
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 9.8e-87 324.3 277 59.9
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.3e-86 323.9 293 60.4
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 8.3e-86 321.2 300 58.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 8.3e-86 321.2 299 57.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.1e-85 320.9 256 64.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.4e-85 318.5 288 58.7
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 5.4e-85 318.5 270 60.7
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.0e-85 318.2 236 65.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.6e-84 317.0 236 64.8
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 5.9e-84 315.1 293 56.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.3e-83 313.9 257 61.1
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.7e-83 313.5 291 58.1
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.7e-83 313.5 293 56.3
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 8.6e-83 311.2 294 55.8
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 8.6e-83 311.2 248 60.1
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.1e-82 310.8 331 50.8
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.5e-82 310.5 299 54.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.5e-82 309.7 307 54.7
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.3e-82 309.3 315 51.7
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.2e-81 307.4 259 61.0
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 4.7e-81 305.4 281 55.9
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.4e-80 303.9 267 60.7
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 4.0e-80 302.4 236 60.2
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.3e-78 297.4 216 68.1
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.1e-77 294.3 287 53.3
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.4e-77 293.9 291 54.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.4e-77 293.1 306 54.2
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 3.2e-77 292.7 371 45.8
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.2e-77 292.7 297 51.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.1e-77 292.4 287 53.0
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 5.4e-77 292.0 231 61.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 2.0e-76 290.0 265 58.5
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 7.8e-76 288.1 226 63.7
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.3e-75 286.6 262 55.7
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.9e-75 285.8 275 54.5
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.6e-75 284.6 243 58.4
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 5.6e-74 282.0 252 55.6
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 7.3e-74 281.6 302 53.0
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.8e-73 279.6 219 58.9
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 8.1e-73 278.1 293 50.2
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 6.4e-70 268.5 241 57.3
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.1e-69 265.8 335 46.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.4e-69 265.4 337 46.0
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.8e-65 253.1 227 58.1
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 5.4e-61 238.8 213 57.3
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 9.6e-58 228.0 231 45.5
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.1e-56 223.0 227 44.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 9.0e-56 221.5 436 36.5
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.8e-54 216.1 163 61.3
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 9.3e-53 211.5 278 41.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.2e-52 211.1 235 44.3
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 3.5e-52 209.5 217 51.6
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 4.8e-49 199.1 267 44.2
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 4.8e-49 199.1 184 58.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.2e-45 186.4 132 68.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 7.9e-44 181.8 143 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 3.3e-42 176.4 172 49.4
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.1e-33 147.1 109 63.3
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.8e-27 127.5 152 46.1
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.7e-20 103.6 107 45.8
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.0e-19 101.7 79 60.8
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.3e-19 100.5 75 73.3
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 8.5e-14 82.0 74 47.3
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.4e-13 81.3 106 47.2
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 1.9e-13 80.9 106 47.2
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 3.6e-12 76.6 58 58.6
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.7e-11 72.4 73 50.7
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 5.7e-10 69.3 185 34.1
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 2.2e-09 67.4 52 61.5


User provided reference genes

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