Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-88 329.7 162 100.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-88 328.2 162 99.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 9.6e-81 303.5 163 93.9
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.3e-79 297.7 162 91.4
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 9.3e-76 287.0 159 89.3
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-75 286.6 159 89.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 4.6e-75 284.6 159 87.4
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.0e-75 284.3 163 86.5
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-74 283.5 162 85.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-74 283.1 161 85.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 8.7e-74 280.4 159 86.2
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-73 279.6 162 84.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.5e-70 269.6 163 82.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.8e-69 265.0 159 84.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-68 261.9 161 81.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.6e-67 259.6 165 81.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.3e-65 251.9 164 78.0
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.5e-62 243.0 169 75.7
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 7.6e-62 240.7 159 78.0
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.9e-61 238.8 166 75.9
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.0e-50 202.2 162 67.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.9e-42 175.3 190 54.7
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.3e-34 149.4 168 55.4
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.8e-34 147.5 164 56.1
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.4e-33 144.4 177 47.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.7e-32 142.1 173 46.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 8.2e-32 141.0 175 46.9
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.4e-31 139.4 165 53.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.4e-31 139.4 168 47.0
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.2e-30 137.1 179 47.5
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.2e-30 137.1 174 46.0
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.6e-30 136.7 185 43.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-30 136.7 173 45.1
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.0e-30 136.3 177 45.8
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.6e-30 136.0 181 45.3
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.6e-30 136.0 171 46.8
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.5e-30 135.2 177 45.2
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-30 135.2 162 50.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-30 135.2 167 50.9
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.5e-30 135.2 162 50.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.5e-30 135.2 173 45.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.5e-30 135.2 178 43.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 5.9e-30 134.8 165 47.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 7.7e-30 134.4 162 50.6
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.7e-30 134.4 180 47.8
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.0e-29 134.0 178 47.2
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.0e-29 134.0 180 44.4
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.3e-29 133.7 178 44.4
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.3e-29 133.7 180 44.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.3e-29 133.7 168 47.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.3e-29 133.7 180 48.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.7e-29 133.3 176 44.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.7e-29 133.3 168 47.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.2e-29 132.9 173 46.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 5.0e-29 131.7 162 48.8
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 5.0e-29 131.7 178 44.9
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.5e-29 131.3 179 45.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 8.5e-29 131.0 174 42.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.1e-28 130.6 163 46.6
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-28 129.8 174 47.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.5e-28 129.4 179 43.0
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.2e-28 129.0 195 42.1
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.2e-28 129.0 174 46.6
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.2e-28 129.0 174 48.3
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 4.2e-28 128.6 162 48.1
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.2e-28 128.6 166 45.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.5e-28 128.3 180 42.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.5e-28 128.3 181 42.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.5e-28 128.3 181 42.5
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 5.5e-28 128.3 178 44.9
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 7.2e-28 127.9 176 46.0
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 9.4e-28 127.5 173 46.2
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-27 127.1 201 42.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-27 127.1 176 44.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.6e-27 126.7 162 49.4
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-27 126.7 176 44.3
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.1e-27 126.3 178 41.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.6e-27 125.6 174 46.6
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 3.6e-27 125.6 181 44.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.1e-27 124.8 163 46.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 6.1e-27 124.8 176 42.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.0e-26 124.0 163 46.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-26 124.0 178 41.6
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-26 124.0 173 44.5
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.0e-26 124.0 167 45.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.4e-26 123.6 181 44.8
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.3e-26 122.9 177 42.4
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.3e-26 122.9 168 45.8
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 4.0e-26 122.1 175 42.9
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.2e-26 121.7 187 41.7
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.2e-26 121.7 185 40.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 5.2e-26 121.7 170 43.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.2e-26 121.7 120 55.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.8e-26 120.9 184 39.7
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 8.8e-26 120.9 188 42.6
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.1e-25 120.6 177 44.6
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.5e-25 120.2 164 45.1
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.5e-25 120.2 184 44.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-25 120.2 184 44.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-25 120.2 184 44.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.5e-25 120.2 172 43.6
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.0e-25 119.8 167 43.7
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-25 119.8 184 41.3
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.6e-25 119.4 184 42.4
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 3.3e-25 119.0 186 41.9
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.3e-25 119.0 187 43.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.4e-25 118.6 179 41.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.3e-24 117.1 181 42.0
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-24 117.1 187 41.7
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.3e-24 117.1 192 41.1
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.7e-24 116.7 177 41.8
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-24 116.7 184 42.9
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.2e-24 116.3 195 40.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.2e-24 116.3 184 42.9
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.2e-24 116.3 186 43.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.8e-24 115.9 186 41.4
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.8e-24 115.9 180 41.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 3.7e-24 115.5 180 44.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.3e-24 114.8 163 44.2
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.3e-24 114.8 183 41.0
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-23 114.0 162 43.2
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-23 114.0 162 43.2
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.4e-23 113.6 205 39.0
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.4e-23 113.6 176 43.2
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-23 113.6 167 44.9
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.8e-23 113.2 183 42.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.8e-23 113.2 154 44.8
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.4e-23 112.8 166 43.4
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 3.1e-23 112.5 183 41.0
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 5.3e-23 111.7 183 41.0
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.3e-23 111.7 171 43.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.3e-23 111.7 123 53.7
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.3e-23 111.7 171 42.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 7.0e-23 111.3 185 40.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 7.0e-23 111.3 174 40.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 7.0e-23 111.3 173 41.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.0e-22 109.8 173 41.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.0e-22 109.8 192 39.6
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.0e-22 109.8 187 40.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.7e-22 109.4 171 40.4
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 3.5e-22 109.0 192 41.1
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 3.5e-22 109.0 192 41.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 4.5e-22 108.6 193 40.9
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 4.5e-22 108.6 153 44.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 5.9e-22 108.2 166 41.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.0e-21 107.5 182 40.7
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-21 107.1 179 40.2
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.7e-21 106.7 184 35.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.7e-21 106.7 176 42.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 5.0e-21 105.1 149 43.6
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.0e-21 105.1 168 39.9
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-20 104.0 149 45.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.5e-20 103.6 182 39.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 3.2e-20 102.4 124 48.4
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 5.5e-20 101.7 182 37.9
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.4e-20 100.9 151 43.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 9.4e-20 100.9 177 39.5
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.7e-19 99.4 180 40.6
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.7e-19 99.4 113 50.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 8.0e-19 97.8 170 40.0
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.0e-18 97.4 156 39.7
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.0e-18 97.4 173 42.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-18 97.1 193 34.7
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.8e-18 96.7 162 41.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 3.0e-18 95.9 175 40.0
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.2e-18 95.1 177 38.4
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.8e-18 94.7 158 40.5
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-17 93.2 186 37.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.6e-17 92.8 182 36.8
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.0e-15 84.7 116 45.7
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-13 79.7 140 37.9
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.8e-13 79.0 114 41.2
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 5.0e-13 78.6 155 36.1
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 6.5e-13 78.2 172 37.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-12 77.0 135 36.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.8e-10 70.1 155 32.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-09 67.4 70 50.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.7e-09 65.1 66 51.5
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.8e-08 62.8 116 35.3
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 3.7e-08 62.4 154 35.1
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.3e-08 61.6 155 30.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-07 60.5 72 44.4
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.1e-07 58.9 66 45.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.7e-06 56.2 95 35.8


User provided reference genes

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