Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-81 305.1 152 100.0
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.6e-77 291.2 162 92.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-76 288.5 160 91.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 5.1e-76 287.7 162 90.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-73 278.9 160 88.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.1e-73 278.5 160 90.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 4.0e-73 278.1 160 87.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.9e-73 277.3 160 86.9
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-72 275.8 159 87.4
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.0e-72 275.8 159 87.4
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-71 272.3 152 91.4
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-70 268.5 159 84.9
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.0e-69 264.2 159 84.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-68 262.7 159 84.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.7e-68 260.8 162 82.7
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.3e-66 256.5 160 81.9
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.5e-63 243.8 161 78.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-62 243.4 160 80.0
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.6e-61 238.4 166 76.5
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.7e-59 231.1 160 76.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.3e-50 203.4 155 71.6
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.8e-44 180.6 183 59.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.1e-33 145.6 159 54.1
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.6e-32 143.3 165 48.5
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.7e-32 142.5 178 48.3
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 7.7e-32 141.0 165 52.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-31 140.6 161 51.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.0e-31 140.6 170 48.8
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.7e-31 139.8 167 49.1
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.9e-31 139.0 172 48.3
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.9e-30 136.3 171 49.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.2e-30 135.2 175 49.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.2e-30 135.2 170 47.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-30 134.8 159 52.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.5e-30 134.8 159 52.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 9.4e-30 134.0 159 52.2
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 9.4e-30 134.0 164 47.6
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.6e-29 133.3 172 45.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-29 133.3 168 52.4
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.6e-29 133.3 172 45.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.1e-29 132.9 175 46.9
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.7e-29 132.5 170 47.6
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.7e-29 132.5 170 47.6
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.7e-29 132.5 161 48.4
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.7e-29 132.5 156 48.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.6e-29 132.1 163 49.1
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.6e-29 132.1 174 46.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.6e-29 132.1 163 49.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 3.6e-29 132.1 174 46.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.7e-29 131.7 168 50.0
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.1e-29 131.3 159 51.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 6.1e-29 131.3 159 50.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.1e-29 131.3 174 46.0
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.1e-29 131.3 174 46.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 6.1e-29 131.3 172 47.1
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.0e-28 130.6 157 51.6
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-28 129.8 159 49.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.8e-28 129.8 175 45.1
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-28 129.8 168 51.8
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.8e-28 129.8 171 47.4
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.8e-28 129.8 169 47.9
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.3e-28 129.4 165 46.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 2.3e-28 129.4 162 46.9
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.0e-28 128.6 169 49.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.0e-28 128.6 175 46.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 4.0e-28 128.6 165 49.7
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 4.0e-28 128.6 168 47.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.2e-28 128.3 192 43.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.2e-28 128.3 170 48.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.2e-28 128.3 165 46.1
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 6.8e-28 127.9 173 45.1
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.8e-28 127.5 168 45.2
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.2e-27 127.1 176 44.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.4e-27 125.2 160 50.0
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.4e-27 125.2 198 41.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 4.4e-27 125.2 178 43.8
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.7e-27 124.8 174 42.5
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.7e-27 124.8 197 43.1
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 7.5e-27 124.4 169 46.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.5e-27 124.4 187 45.5
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.8e-27 124.0 152 50.7
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-26 123.6 158 49.4
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-26 123.6 164 45.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-26 123.6 172 43.6
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.7e-26 123.2 165 46.7
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.2e-26 122.9 165 43.6
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.8e-26 122.5 168 45.2
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 4.8e-26 121.7 165 44.8
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.8e-26 121.7 189 43.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.8e-26 121.7 189 43.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.8e-26 121.7 189 43.4
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 6.3e-26 121.3 187 42.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.3e-26 121.3 158 46.2
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 6.3e-26 121.3 175 40.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 6.3e-26 121.3 187 44.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 8.3e-26 120.9 187 42.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 8.3e-26 120.9 166 46.4
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-25 120.6 169 42.6
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.4e-25 120.2 186 43.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-25 120.2 189 43.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.4e-25 120.2 108 58.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.8e-25 119.8 190 42.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-25 119.8 166 47.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.8e-25 119.8 172 47.1
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-25 119.8 165 43.6
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-25 119.4 189 45.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.4e-25 119.4 158 46.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.1e-25 119.0 162 43.8
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.1e-25 119.0 151 47.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.1e-25 119.0 151 47.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.1e-25 118.6 169 42.6
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.1e-25 118.6 179 45.8
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 4.1e-25 118.6 169 43.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-25 118.2 189 43.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.0e-25 117.9 189 42.3
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 7.0e-25 117.9 169 45.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.1e-25 117.5 183 43.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-24 117.1 195 41.5
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.2e-24 117.1 147 48.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.0e-24 116.3 165 45.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.0e-24 116.3 174 45.4
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.5e-24 115.2 155 43.2
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.7e-24 114.4 152 47.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 7.7e-24 114.4 169 43.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.0e-23 114.0 176 42.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-23 114.0 196 42.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.0e-23 114.0 196 42.3
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-23 113.6 197 42.1
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.3e-23 113.6 174 43.7
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.9e-23 112.5 170 41.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.9e-23 112.5 213 39.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.9e-23 112.5 156 44.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 5.0e-23 111.7 184 41.8
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.0e-23 111.7 183 43.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 5.0e-23 111.7 166 46.4
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 5.0e-23 111.7 173 41.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 6.5e-23 111.3 177 37.9
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.5e-22 110.2 183 40.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.5e-22 109.4 120 55.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 9.5e-22 107.5 173 41.6
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.5e-22 107.5 169 42.0
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.2e-21 107.1 174 41.4
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.2e-21 107.1 180 41.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.6e-21 105.5 179 41.9
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.0e-20 104.0 137 43.8
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.4e-20 103.6 171 42.7
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.3e-20 102.8 158 39.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.2e-20 101.7 167 41.3
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 5.2e-20 101.7 183 38.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 6.8e-20 101.3 145 42.1
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 6.8e-20 101.3 177 39.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.8e-20 100.9 115 48.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.2e-19 100.5 173 41.0
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.2e-19 100.5 179 39.1
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.5e-19 100.1 149 45.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.0e-19 99.8 158 39.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.0e-19 99.8 166 41.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 4.4e-19 98.6 174 40.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 5.7e-19 98.2 170 41.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.2e-18 96.3 152 39.5
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-18 96.3 193 35.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.8e-18 95.9 145 42.1
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-18 95.9 105 52.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.8e-17 93.2 163 39.9
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 4.1e-17 92.0 185 38.4
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.1e-17 92.0 169 39.1
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 7.0e-17 91.3 144 38.2
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.6e-16 90.1 145 44.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-16 89.4 169 37.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.7e-13 78.6 111 45.9
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.8e-12 76.6 135 37.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.2e-11 73.9 143 36.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-11 73.6 138 35.5
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.5e-11 73.6 98 46.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.9e-10 68.6 63 54.0
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.3e-10 67.8 151 33.8
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.1e-09 65.5 60 56.7
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.4e-09 65.1 167 33.5
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-09 64.7 72 48.6
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 7.8e-08 61.2 155 37.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.9e-07 58.9 151 30.5
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.6e-06 55.1 111 33.3
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.5e-06 54.3 90 40.0


User provided reference genes

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