Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09968 Brassica carinata HOM05D013838 ORTHO05D019961 6.3e-64 247.3 125 100.0
C04p34500 Brassica napus HOM05D013838 ORTHO05D019961 6.3e-64 247.3 125 100.0
BcaC06g35351 Brassica carinata HOM05D013838 ORTHO05D019961 2.6e-54 215.3 110 97.3
BolC4t25011H Brassica oleracea HOM05D013838 ORTHO05D019961 1.5e-36 156.4 125 70.4
BcaB01g01605 Brassica carinata HOM05D013838 ORTHO05D092283 2.5e-36 155.6 125 70.4
BolC9t57974H Brassica oleracea HOM05D013838 ORTHO05D019961 8.9e-34 147.1 125 68.0
A09p37240 Brassica napus HOM05D013838 ORTHO05D019961 7.5e-33 144.1 125 65.6
A03p06970 Brassica napus HOM05D013838 ORTHO05D019961 1.7e-32 142.9 121 66.1
C01p16270 Brassica napus HOM05D013838 ORTHO05D033741 1.0e-21 107.1 50 100.0
BolC5t31393H Brassica oleracea HOM05D013838 ORTHO05D033741 2.3e-21 105.9 52 94.2
BolC7t42215H Brassica oleracea HOM05D013838 ORTHO05D033741 2.3e-21 105.9 52 94.2
BcaC09g50107 Brassica carinata HOM05D001343 ORTHO05D002008 1.3e-16 90.1 50 84.0
A01p23240 Brassica napus HOM05D001343 ORTHO05D002008 1.3e-16 90.1 50 84.0
C01p28880 Brassica napus HOM05D001343 ORTHO05D002008 1.3e-16 90.1 50 84.0
BolC1t02820H Brassica oleracea HOM05D001343 ORTHO05D002008 1.3e-16 90.1 50 84.0
BraA01t02234Z Brassica rapa HOM05D001343 ORTHO05D002008 1.3e-16 90.1 50 84.0
BcaNung00367 Brassica carinata HOM05D001343 ORTHO05D002008 2.9e-16 89.0 50 82.0
CARHR161460 Cardamine hirsuta HOM05D001343 ORTHO05D002008 9.2e-15 84.0 50 74.0
AL5G32290 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 3.5e-14 82.0 50 74.0
Sp5g10440 Schrenkiella parvula HOM05D001343 ORTHO05D002008 7.8e-14 80.9 50 74.0
AT3G51830 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 1.0e-13 80.5 50 72.0
Carub.0005s1818 Capsella rubella HOM05D001343 ORTHO05D002008 1.1e-12 77.0 51 72.5
Thhalv10010245m.g Eutrema salsugineum HOM05D001343 ORTHO05D002008 1.9e-12 76.3 50 72.0
THA.LOC104805930 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 1.4e-10 70.1 50 66.0
Aa31LG10G9060 Aethionema arabicum HOM05D001343 ORTHO05D002008 8.9e-10 67.4 50 62.0
Cpa.g.sc11.98 Carica papaya HOM05D001343 ORTHO05D002008 5.8e-09 64.7 62 56.5
Ciclev10011419m.g Citrus clementina HOM05D001343 ORTHO05D002008 5.8e-09 64.7 52 63.5
Prupe.6G279500 Prunus persica HOM05D001343 ORTHO05D002008 5.8e-09 64.7 47 61.7
CiPaw.10G157400 Carya illinoinensis HOM05D001343 ORTHO05D002008 7.5e-09 64.3 59 57.6
Cfa017190 Carpinus fangiana HOM05D001343 ORTHO05D002008 4.9e-08 61.6 59 55.9
Thecc.05G013700 Theobroma cacao HOM05D001343 ORTHO05D002008 4.9e-08 61.6 49 61.2
Haze_21021 Corylus avellana HOM05D001343 ORTHO05D002008 6.4e-08 61.2 59 54.2
QL07p035143 Quercus lobata HOM05D001343 ORTHO05D002008 6.4e-08 61.2 44 61.4
Actinidia11573 Actinidia chinensis HOM05D001343 ORTHO05D002008 8.3e-08 60.8 62 53.2
Lalb_Chr01g0023001 Lupinus albus HOM05D001343 ORTHO05D002008 5.4e-07 58.2 54 57.4
TWI74G0687 Tripterygium wilfordii HOM05D001343 ORTHO05D002008 5.4e-07 58.2 62 48.4
GSVIVG01011177001 Vitis vinifera HOM05D001343 ORTHO05D002008 7.1e-07 57.8 61 52.5
Lalb_Chr03g0043191 Lupinus albus HOM05D001343 ORTHO05D002008 9.2e-07 57.4 65 52.3
Actinidia29090 Actinidia chinensis HOM05D001343 ORTHO05D002008 1.2e-06 57.0 51 52.9
CSS0016549 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.6e-06 56.6 50 54.0
CSS0021516 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 1.6e-06 56.6 50 54.0
RcHm_v2.0_Chr3g0462761 Rosa chinensis HOM05D001343 ORTHO05D002008 2.1e-06 56.2 42 59.5
Duzib093G1742 Durio zibethinus HOM05D001343 ORTHO05D002008 2.7e-06 55.8 50 56.0
FAN14G3930 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.7e-06 55.8 42 61.9
MELO3C009151.2 Cucumis melo HOM05D001343 ORTHO05D002008 3.5e-06 55.5 42 59.5
Gohir.D04G131400 Gossypium hirsutum HOM05D001343 ORTHO05D002008 3.5e-06 55.5 49 53.1
Gorai.012G115300 Gossypium raimondii HOM05D001343 ORTHO05D002008 3.5e-06 55.5 49 53.1
Dinv01496 Davidia involucrata HOM05D001343 ORTHO05D002008 4.6e-06 55.1 50 56.0
Lj1g0006734 Lotus japonicus HOM05D001343 ORTHO05D002008 4.6e-06 55.1 54 57.4
Oeu038762.1 Olea europaea HOM05D001343 ORTHO05D002008 4.6e-06 55.1 44 59.1
CsaV3_3G033610 Cucumis sativus L. HOM05D001343 ORTHO05D002008 6.0e-06 54.7 42 59.5
Gohir.A04G092200 Gossypium hirsutum HOM05D001343 ORTHO05D002008 6.0e-06 54.7 49 53.1
Lsat_1_v5_gn_9_35180 Lactuca sativa HOM05D001343 ORTHO05D002008 6.0e-06 54.7 55 50.9
Rhsim05G0217100 Rhododendron simsii HOM05D001343 ORTHO05D002008 6.0e-06 54.7 51 49.0
vmacro20292 Vaccinium macrocarpon HOM05D001343 ORTHO05D002008 6.0e-06 54.7 53 54.7
Potri.016G118300 Populus trichocarpa HOM05D001343 ORTHO05D002008 7.8e-06 54.3 49 53.1


User provided reference genes

Program Settings