Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-229 798.9 448 100.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-229 798.9 448 100.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 2.0e-229 798.9 448 100.0
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.7e-180 636.3 479 76.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.3e-177 625.9 458 79.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.3e-177 625.9 458 79.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 8.3e-175 617.5 465 81.7
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 5.9e-173 611.3 465 79.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-169 600.5 459 80.8
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.3e-167 593.6 482 74.9
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.2e-165 587.0 478 73.4
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 7.8e-165 584.3 480 73.8
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-162 576.6 470 70.6
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 2.4e-158 562.8 474 74.9
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-155 553.5 346 84.4
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 9.2e-150 534.3 391 76.2
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.1e-147 527.3 484 64.7
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.3e-143 513.8 389 73.8
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 4.9e-143 511.9 462 66.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 6.4e-143 511.5 399 71.9
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 6.4e-143 511.5 399 71.9
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 6.4e-143 511.5 399 71.9
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.5e-139 500.4 442 66.5
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 5.8e-136 488.4 474 57.6
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.3e-131 472.2 476 58.8
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 9.3e-110 401.4 390 61.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.9e-103 379.8 498 47.4
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 5.1e-100 369.0 499 46.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 8.8e-100 368.2 472 47.2
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.5e-99 367.5 485 47.0
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 3.3e-99 366.3 513 45.6
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.3e-98 364.4 497 45.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.8e-98 363.2 500 44.4
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 4.8e-98 362.5 498 46.0
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.4e-97 360.1 424 49.1
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.1e-97 359.8 460 48.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.1e-97 359.8 534 45.3
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.6e-96 356.7 468 46.4
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.6e-96 356.7 495 44.6
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 7.7e-96 355.1 519 46.6
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.0e-95 354.8 456 48.0
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.0e-95 352.4 460 47.2
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.0e-95 352.4 460 47.2
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.1e-94 351.3 460 47.2
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.9e-94 350.5 464 45.3
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 4.2e-94 349.4 532 45.3
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.0e-92 344.7 488 44.7
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.8e-92 344.0 521 44.9
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-92 344.0 467 46.5
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-92 344.0 469 46.1
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.8e-92 344.0 468 45.5
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.8e-92 344.0 526 45.8
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.1e-92 342.4 494 47.2
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.0e-91 340.5 540 43.7
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 3.3e-91 339.7 510 45.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.4e-91 339.3 461 45.8
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.7e-90 337.4 535 41.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 9.1e-89 331.6 452 44.9
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.5e-88 330.9 486 44.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.5e-88 330.9 530 41.9
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.6e-88 330.1 528 43.9
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.6e-88 330.1 475 44.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 7.7e-88 328.6 495 45.3
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.3e-87 327.8 468 42.7
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.5e-86 323.6 477 44.9
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.2e-86 323.2 479 43.8
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.2e-86 322.8 352 52.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.2e-86 322.8 497 44.5
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 7.2e-86 322.0 449 46.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 9.4e-86 321.6 539 39.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 8.0e-85 318.5 492 43.7
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.0e-84 318.2 363 50.1
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.3e-84 317.0 533 42.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.0e-84 316.6 368 49.7
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 8.8e-84 315.1 473 45.7
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.1e-83 314.7 469 43.5
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.1e-83 314.7 432 45.4
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.6e-83 313.5 458 42.8
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 3.3e-83 313.2 503 41.7
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 4.4e-83 312.8 437 44.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 5.7e-83 312.4 481 44.5
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.8e-81 307.4 441 44.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.8e-81 307.4 474 41.4
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 2.4e-81 307.0 383 45.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.1e-81 306.6 379 48.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.3e-81 305.8 441 43.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 9.1e-81 305.1 463 44.1
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.6e-80 304.3 426 45.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 7.7e-80 302.0 510 39.2
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 7.7e-80 302.0 441 41.7
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.3e-79 301.2 485 42.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.7e-79 300.8 415 46.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.2e-79 300.4 484 42.4
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.0e-79 299.3 460 43.7
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 5.0e-79 299.3 483 41.6
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 8.5e-79 298.5 483 40.6
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.5e-78 297.7 513 40.5
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.5e-78 297.7 356 47.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.9e-78 297.4 353 49.9
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.5e-78 297.0 448 44.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.2e-78 296.2 354 46.9
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 6.1e-77 292.4 416 44.5
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 8.0e-77 292.0 363 47.4
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.0e-76 291.6 396 43.4
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.4e-76 291.2 446 43.3
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.0e-76 290.0 461 42.1
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 4.0e-76 289.7 364 47.8
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 4.4e-75 286.2 463 40.8
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.3e-74 284.6 457 42.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.7e-74 284.3 355 48.2
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.7e-74 284.3 462 42.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.8e-74 283.5 365 46.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 6.3e-74 282.3 338 50.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.3e-74 282.0 434 41.7
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.7e-72 276.9 508 37.8
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 5.9e-72 275.8 472 39.2
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 3.8e-71 273.1 356 46.9
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.2e-69 268.1 468 40.6
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.6e-69 267.7 351 46.2
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 4.7e-69 266.2 351 43.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 4.7e-69 266.2 470 37.2
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 2.3e-68 263.8 304 50.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 5.2e-68 262.7 302 48.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 6.8e-68 262.3 470 40.0
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.3e-66 255.8 375 42.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 6.3e-66 255.8 451 39.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.4e-65 254.6 362 42.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.4e-65 254.6 300 50.0
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.4e-65 253.8 374 43.3
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 8.6e-63 245.4 299 48.2
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.2e-62 243.0 382 39.5
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.5e-59 232.3 329 44.4
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.1e-53 212.6 163 69.9
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.4e-52 211.5 163 70.6
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.2e-52 209.5 412 37.1
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.8e-51 206.1 403 36.2
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.4e-50 202.6 221 49.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.2e-49 200.3 258 47.3
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.0e-48 197.6 295 38.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 6.0e-48 196.1 513 33.3
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-43 181.8 537 30.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-43 181.8 537 30.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.3e-42 178.3 466 31.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-33 148.3 451 29.3
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.9e-33 147.9 221 39.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.4e-33 147.5 221 40.7
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.1e-33 146.7 215 39.5
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.3e-30 136.0 349 30.1
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.1e-29 134.4 247 36.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.8e-28 129.4 415 27.2
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.5e-27 128.3 254 35.0
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.8e-26 123.6 208 35.6
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.9e-25 121.3 330 31.2
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.9e-25 121.3 248 34.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.4e-19 100.5 167 40.1
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.1e-16 91.3 116 39.7
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.5e-16 90.5 190 34.2
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.6e-16 90.1 86 55.8
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-15 89.0 59 79.7
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 6.2e-13 79.7 150 36.0
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 6.9e-12 76.3 89 46.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 7.4e-06 56.2 56 44.6


User provided reference genes

Program Settings