Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09927 Brassica carinata HOM05D003424 ORTHO05D004025 1.5e-37 159.1 81 100.0
C04p35090 Brassica napus HOM05D003424 ORTHO05D004025 1.5e-37 159.1 81 100.0
BolC4t25065H Brassica oleracea HOM05D003424 ORTHO05D004025 1.5e-37 159.1 81 100.0
BcaB02g08321 Brassica carinata HOM05D003424 ORTHO05D004025 8.0e-36 153.3 81 96.3
A04p03210 Brassica napus HOM05D003424 ORTHO05D004025 8.0e-36 153.3 81 96.3
BraA04t16043Z Brassica rapa HOM05D003424 ORTHO05D004025 8.0e-36 153.3 81 96.3
BcaC07g40058 Brassica carinata HOM05D003424 ORTHO05D004025 1.0e-35 152.9 81 95.1
BcaC07g40060 Brassica carinata HOM05D003424 ORTHO05D004025 1.0e-35 152.9 81 95.1
A09p50210 Brassica napus HOM05D003424 ORTHO05D004025 2.3e-35 151.8 81 93.8
BraA09t40471Z Brassica rapa HOM05D003424 ORTHO05D004025 2.3e-35 151.8 81 93.8
Thhalv10005924m.g Eutrema salsugineum HOM05D003424 ORTHO05D004025 2.3e-35 151.8 81 93.8
Sp5g05310 Schrenkiella parvula HOM05D003424 ORTHO05D004025 2.3e-35 151.8 81 93.8
C08p32690 Brassica napus HOM05D003424 ORTHO05D004025 2.0e-34 148.7 81 91.4
BolC8t50881H Brassica oleracea HOM05D003424 ORTHO05D004025 2.0e-34 148.7 81 91.4
AL5G38830 Arabidopsis lyrata HOM05D003424 ORTHO05D004025 3.7e-33 144.4 81 88.9
AT3G57290 Arabidopsis thaliana HOM05D003424 ORTHO05D004025 3.7e-33 144.4 81 88.9
CARHR167490 Cardamine hirsuta HOM05D003424 ORTHO05D004025 3.7e-33 144.4 81 88.9
Carub.0005s2414 Capsella rubella HOM05D003424 ORTHO05D004025 8.3e-33 143.3 81 87.7
Nitab4.5_0000364g0010 Nicotiana tabacum HOM05D003424 ORTHO05D004025 1.1e-32 142.9 81 88.9
Nitab4.5_0000677g0120 Nicotiana tabacum HOM05D003424 ORTHO05D004025 2.4e-32 141.7 81 87.7
Aa31LG1G23570 Aethionema arabicum HOM05D003424 ORTHO05D004025 9.2e-32 139.8 81 87.7
Lj5g0010982 Lotus japonicus HOM05D003424 ORTHO05D004025 2.0e-31 138.7 81 84.0
TWI53G0167 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 3.5e-31 137.9 81 85.2
THA.LOC104801979 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 4.5e-31 137.5 81 84.0
Aa31LG10G12160 Aethionema arabicum HOM05D003424 ORTHO05D004025 5.9e-31 137.1 81 84.0
TPR.G8064 Trifolium pratense HOM05D003424 ORTHO05D004025 5.9e-31 137.1 81 84.0
Manes.09G010300 Manihot esculenta HOM05D003424 ORTHO05D004025 7.8e-31 136.7 81 84.0
CAN.G1656.4 Capsicum annuum HOM05D003424 ORTHO05D004025 1.0e-30 136.3 81 82.7
Phvul.007G250100 Phaseolus vulgaris HOM05D003424 ORTHO05D004025 1.0e-30 136.3 81 82.7
VMungo0720G2843 Vigna mungo HOM05D003424 ORTHO05D004025 1.0e-30 136.3 81 82.7
Ca_12264_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 1.3e-30 136.0 81 84.0
Ca_30550_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 1.3e-30 136.0 81 84.0
Dinv39664 Davidia involucrata HOM05D003424 ORTHO05D004025 1.7e-30 135.6 81 84.0
Peaxi162Scf00069g01214 Petunia axillaris HOM05D003424 ORTHO05D004025 1.7e-30 135.6 79 86.1
QL07p003998 Quercus lobata HOM05D003424 ORTHO05D004025 1.7e-30 135.6 80 82.5
Manes.03G083194 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 82.7
Manes.03G083226 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 82.7
Manes.03G083258 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 82.7
Manes.03G083290 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 82.7
Manes.03G083322 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 82.7
Manes.09G010401 Manihot esculenta HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 82.7
Medtr1g051820 Medicago truncatula HOM05D003424 ORTHO05D004025 2.3e-30 135.2 81 84.0
Sp4g23800 Schrenkiella parvula HOM05D003424 ORTHO05D004025 2.3e-30 135.2 78 85.9
Atru.chr1.1209 Acer truncatum HOM05D003424 ORTHO05D004025 2.9e-30 134.8 81 80.2
TWI77G0522 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 2.9e-30 134.8 81 84.0
Glyma.02G187100 Glycine max HOM05D003424 ORTHO05D004025 3.8e-30 134.4 81 81.5
MD12G1083100 Malus domestica HOM05D003424 ORTHO05D004025 3.8e-30 134.4 81 82.7
MD14G1078200 Malus domestica HOM05D003424 ORTHO05D004025 3.8e-30 134.4 81 82.7
Prupe.7G052700 Prunus persica HOM05D003424 ORTHO05D004025 3.8e-30 134.4 81 82.7
ClCG04G003770 Citrullus lanatus HOM05D003424 ORTHO05D004025 5.0e-30 134.0 81 80.2
arahy.Tifrunner.gnm1.ann1.MH7EBB Arachis hypogaea HOM05D003424 ORTHO05D004025 6.6e-30 133.7 81 81.5
arahy.Tifrunner.gnm1.ann1.ZS3MQE Arachis hypogaea HOM05D003424 ORTHO05D004025 6.6e-30 133.7 81 81.5
CiPaw.10G035800 Carya illinoinensis HOM05D003424 ORTHO05D004025 6.6e-30 133.7 81 82.7
Lalb_Chr23g0274141 Lupinus albus HOM05D003424 ORTHO05D004025 6.6e-30 133.7 81 81.5
Cc06_g18160 Coffea canephora HOM05D003424 ORTHO05D004025 8.6e-30 133.3 79 82.3
Cc06_g18170 Coffea canephora HOM05D003424 ORTHO05D004025 8.6e-30 133.3 79 82.3
COL.COLO4_36514 Corchorus olitorius HOM05D003424 ORTHO05D004025 8.6e-30 133.3 81 80.2
MELO3C026327.2 Cucumis melo HOM05D003424 ORTHO05D004025 8.6e-30 133.3 81 79.0
CsaV3_4G027730 Cucumis sativus L. HOM05D003424 ORTHO05D004025 8.6e-30 133.3 81 79.0
Rhsim04G0106600 Rhododendron simsii HOM05D003424 ORTHO05D004025 1.1e-29 132.9 81 80.2
Ciclev10004983m.g Citrus clementina HOM05D003424 ORTHO05D004025 1.9e-29 132.1 81 81.5
FAN02G1912 Fragaria x ananassa HOM05D003424 ORTHO05D004025 1.9e-29 132.1 81 81.5
CiPaw.09G040700 Carya illinoinensis HOM05D003424 ORTHO05D004025 2.5e-29 131.7 81 82.7
Lsat_1_v5_gn_8_117161 Lactuca sativa HOM05D003424 ORTHO05D004025 2.5e-29 131.7 81 77.8
Sed0024607 Sechium edule HOM05D003424 ORTHO05D004025 3.3e-29 131.3 81 79.0
DCAR_020512 Daucus carota HOM05D003424 ORTHO05D004025 4.3e-29 131.0 81 79.0
Migut.J01716 Erythranthe guttata HOM05D003424 ORTHO05D004025 5.6e-29 130.6 81 79.0
Potri.006G047600 Populus trichocarpa HOM05D003424 ORTHO05D004025 5.6e-29 130.6 81 80.2
THA.LOC104824428 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 5.6e-29 130.6 77 81.8
FAN05G4136 Fragaria x ananassa HOM05D003424 ORTHO05D004025 9.5e-29 129.8 81 80.2
PGSC0003DMG400029829 Solanum tuberosum HOM05D003424 ORTHO05D004025 9.5e-29 129.8 81 80.2
Duzib128G0558 Durio zibethinus HOM05D003424 ORTHO05D004025 1.2e-28 129.4 79 79.7
Hma1.2p1_0110F.1_g052940 Hydrangea macrophylla HOM05D003424 ORTHO05D004025 1.6e-28 129.0 80 77.5
Sc19g0008510 Simmondsia chinensis HOM05D003424 ORTHO05D004025 1.6e-28 129.0 81 77.8
Gohir.A11G309600 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 79.0
HanXRQChr08g0229101 Helianthus annuus HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 75.3
HanXRQChr09g0258441 Helianthus annuus HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 75.3
Lalb_Chr08g0235171 Lupinus albus HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 79.0
Lalb_Chr08g0235181 Lupinus albus HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 79.0
Solyc10g079880.2 Solanum lycopersicum HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 79.0
Sopen10g030490 Solanum pennellii HOM05D003424 ORTHO05D004025 2.1e-28 128.6 81 79.0
CANSAT80G0981 Cannabis sativa HOM05D003424 ORTHO05D004025 2.8e-28 128.3 77 80.5
CANSAT80G2233 Cannabis sativa HOM05D003424 ORTHO05D004025 2.8e-28 128.3 77 80.5
ECA232G2680 Erigeron canadensis HOM05D003424 ORTHO05D004025 2.8e-28 128.3 81 75.3
Gohir.D11G325000 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.8e-28 128.3 81 80.2
Gorai.007G355800 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.8e-28 128.3 81 80.2
SGA_v2.0_scaffold105G30370 Striga asiatica HOM05D003424 ORTHO05D004025 3.6e-28 127.9 81 77.8
Thecc.05G303700 Theobroma cacao HOM05D003424 ORTHO05D004025 3.6e-28 127.9 81 77.8
TAR623G1380 Trochodendron aralioides HOM05D003424 ORTHO05D004025 3.6e-28 127.9 81 76.5
FAN14G2785 Fragaria x ananassa HOM05D003424 ORTHO05D004025 4.7e-28 127.5 79 81.0
GSVIVG01005045001 Vitis vinifera HOM05D003424 ORTHO05D004025 4.7e-28 127.5 81 76.5
Glyma.10G106100 Glycine max HOM05D003424 ORTHO05D004025 6.1e-28 127.1 81 77.8
Gohir.D11G324900 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.1e-28 127.1 81 77.8
Cpa.g.sc182.25 Carica papaya HOM05D003424 ORTHO05D004025 8.0e-28 126.7 78 78.2
Eucgr.A02306 Eucalyptus grandis HOM05D003424 ORTHO05D004025 8.0e-28 126.7 81 74.1
Gorai.007G355700 Gossypium raimondii HOM05D003424 ORTHO05D004025 8.0e-28 126.7 81 76.5
Sabra16G0048600 Salix brachista HOM05D003424 ORTHO05D004025 8.0e-28 126.7 81 77.8
MSTRG.6406 Avicennia marina HOM05D003424 ORTHO05D004025 1.0e-27 126.3 81 75.3
Haze_21124 Corylus avellana HOM05D003424 ORTHO05D004025 1.0e-27 126.3 79 81.0
Potri.016G043800 Populus trichocarpa HOM05D003424 ORTHO05D004025 1.0e-27 126.3 81 77.8
PGR004G2306 Punica granatum HOM05D003424 ORTHO05D004025 1.4e-27 125.9 81 79.0
AUR62026108 Chenopodium quinoa HOM05D003424 ORTHO05D004025 1.8e-27 125.6 81 76.5
Gohir.A11G309500 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.8e-27 125.6 81 76.5
RcHm_v2.0_Chr3g0483891 Rosa chinensis HOM05D003424 ORTHO05D004025 1.8e-27 125.6 77 77.9
Duzib093G1716 Durio zibethinus HOM05D003424 ORTHO05D004025 2.3e-27 125.2 83 77.1
Sabra06G0033100 Salix brachista HOM05D003424 ORTHO05D004025 3.0e-27 124.8 81 76.5
Hund12364 Selenicereus undatus HOM05D003424 ORTHO05D004025 3.0e-27 124.8 78 79.5
Actinidia17671 Actinidia chinensis HOM05D003424 ORTHO05D004025 4.0e-27 124.4 79 81.0
Lj1C1124G13 Lonicera japonica HOM05D003424 ORTHO05D004025 4.0e-27 124.4 82 75.6
Medtr2g079780 Medicago truncatula HOM05D003424 ORTHO05D004025 5.2e-27 124.0 81 76.5
Cfa000245 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.2e-26 122.9 79 79.7
Cfa017072 Carpinus fangiana HOM05D003424 ORTHO05D004025 1.2e-26 122.9 79 79.7
AUR62024517 Chenopodium quinoa HOM05D003424 ORTHO05D004025 2.0e-26 122.1 79 77.2
Cfa016772 Carpinus fangiana HOM05D003424 ORTHO05D004025 2.6e-26 121.7 80 80.0
Ah.04g164170 Amaranthus hybridus HOM05D003424 ORTHO05D004025 5.7e-26 120.6 79 77.2
EL10Ac3g07146 Beta vulgaris HOM05D003424 ORTHO05D004025 5.7e-26 120.6 81 74.1
Cc00_g29150 Coffea canephora HOM05D003424 ORTHO05D004025 5.7e-26 120.6 67 86.6
Oeu033903.1 Olea europaea HOM05D003424 ORTHO05D004025 5.7e-26 120.6 82 74.4
Migut.K00104 Erythranthe guttata HOM05D003424 ORTHO05D004025 2.2e-25 118.6 75 73.3
Nn2g15108 Nelumbo nucifera HOM05D003424 ORTHO05D004025 2.7e-23 111.7 80 68.8
Haze_19783 Corylus avellana HOM05D003424 ORTHO05D004025 5.0e-22 107.5 70 80.0
Actinidia09299 Actinidia chinensis HOM05D003424 ORTHO05D004025 6.6e-22 107.1 66 80.3
Nn7g36420 Nelumbo nucifera HOM05D003424 ORTHO05D004025 6.6e-22 107.1 80 63.8
Aqoxy2G00237 Aquilegia oxysepala HOM05D003424 ORTHO05D004025 2.5e-21 105.1 79 63.3
BcaB02g07613 Brassica carinata HOM05D003424 ORTHO05D004025 9.5e-21 103.2 76 73.7
PSO675G6801 Papaver somniferum HOM05D003424 ORTHO05D004025 2.0e-18 95.5 72 61.1
PSO675G7866 Papaver somniferum HOM05D003424 ORTHO05D004025 4.4e-18 94.4 72 61.1
CDE08G1324 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 3.7e-17 91.3 82 58.5
Psat5g246160 Pisum sativum HOM05D003424 ORTHO05D004025 3.7e-17 91.3 55 81.8
ATR0329G046 Amborella trichopoda HOM05D003424 ORTHO05D004025 1.4e-16 89.4 77 57.1
Pp3c20_5690 Physcomitrium patens HOM05D003424 ORTHO05D004025 1.2e-15 86.3 79 49.4
Zm00001eb095240 Zea mays HOM05D003424 ORTHO05D004025 3.5e-15 84.7 81 54.3
Os07g0222300 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 4.6e-15 84.3 83 51.8
Pp3c8_15010 Physcomitrium patens HOM05D003424 ORTHO05D004025 4.6e-15 84.3 77 50.6
Zm00001eb303380 Zea mays HOM05D003424 ORTHO05D004025 4.6e-15 84.3 81 53.1
MCO16G302 Micromonas commoda HOM05D003424 ORTHO05D004025 6.0e-15 84.0 73 54.8
CDE09G0956 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 1.0e-14 83.2 64 62.5
Psat6g117080 Pisum sativum HOM05D003424 ORTHO05D004025 1.3e-14 82.8 48 85.4
SEGI_12156 Sequoiadendron giganteum HOM05D003424 ORTHO05D004025 3.0e-14 81.6 68 55.9
vmacro09050 Vaccinium macrocarpon HOM05D003424 ORTHO05D004025 3.9e-14 81.3 46 84.8
Mapoly0007s0188 Marchantia polymorpha HOM05D003424 ORTHO05D004025 8.6e-14 80.1 70 51.4
Os07g0167000 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 8.6e-14 80.1 83 49.4
SMO223G0020 Selaginella moellendorffii HOM05D003424 ORTHO05D004025 5.6e-13 77.4 72 50.0
CBR_g48694 Chara braunii HOM05D003424 ORTHO05D004025 6.2e-12 73.9 82 46.3
HanXRQChr10g0303321 Helianthus annuus HOM05D000894 ORTHO05D001833 6.2e-12 73.9 46 73.9
Cre12.g498100 Chlamydomonas reinhardtii HOM05D003424 ORTHO05D004025 1.4e-11 72.8 71 52.1
Os07g0503700 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 1.8e-11 72.4 70 48.6
HPP92_006701 Vanilla planifolia HOM05D003424 ORTHO05D004025 1.8e-11 72.4 62 54.8
PRCOL_00006598 Prasinoderma coloniale HOM05D003424 ORTHO05D004025 4.0e-11 71.2 66 50.0
TAR633G0793 Trochodendron aralioides HOM05D003424 ORTHO05D004025 1.2e-10 69.7 54 57.4
Haze_26473 Corylus avellana HOM05D003424 ORTHO05D004025 4.4e-10 67.8 67 50.7
PSO210G7607 Papaver somniferum HOM05D006021 ORTHO05D007747 1.2e-07 59.7 39 66.7
Psat5g243200 Pisum sativum HOM05D003424 ORTHO05D004025 2.1e-07 58.9 33 87.9
Cfa022230 Carpinus fangiana HOM05D003424 ORTHO05D004025 6.0e-07 57.4 63 44.4


User provided reference genes

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