Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 2.3e-235 818.5 421 100.0
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 2.3e-235 818.5 421 100.0
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 2.3e-235 818.5 421 100.0
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 3.4e-223 778.1 423 94.8
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 3.4e-223 778.1 423 94.8
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 5.9e-223 777.3 424 95.3
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 7.7e-223 776.9 422 94.8
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.7e-222 775.8 424 95.0
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 3.8e-222 774.6 421 95.5
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 7.2e-221 770.4 422 94.5
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.2e-220 769.6 424 94.8
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.5e-218 762.7 427 91.3
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.5e-218 762.7 427 91.8
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 7.4e-218 760.4 427 91.1
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 8.8e-211 736.9 432 87.5
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 7.5e-210 733.8 432 87.0
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.4e-208 729.6 431 86.8
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 9.1e-208 726.9 431 86.1
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 7.7e-207 723.8 423 87.5
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.0e-206 723.4 474 81.6
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 2.9e-206 721.8 423 87.2
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 5.0e-206 721.1 423 87.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 5.0e-206 721.1 422 87.9
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 8.5e-206 720.3 421 90.5
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.5e-205 718.8 423 87.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 2.5e-205 718.8 429 86.0
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 3.2e-205 718.4 424 86.6
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.7e-204 715.3 421 86.9
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.8e-203 710.3 431 84.9
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.1e-200 700.3 429 83.7
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 5.6e-181 637.9 430 75.1
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.6e-181 637.9 430 74.9
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.6e-180 636.3 425 75.8
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.6e-180 636.3 428 74.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 3.6e-180 635.2 425 76.0
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 8.0e-180 634.0 425 75.5
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.4e-179 633.3 420 76.2
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.4e-179 633.3 427 74.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.8e-179 632.9 427 74.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 5.2e-179 631.3 425 75.3
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 8.9e-179 630.6 389 79.9
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.5e-178 629.8 424 75.2
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 2.0e-178 629.4 425 74.4
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 3.4e-178 628.6 426 75.4
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 5.8e-178 627.9 426 74.9
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 5.8e-178 627.9 426 75.4
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.9e-177 625.5 427 74.9
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 4.9e-177 624.8 431 73.8
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 6.4e-177 624.4 428 74.5
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.1e-176 623.6 389 78.9
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.1e-176 623.6 421 74.3
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.1e-176 623.6 418 74.4
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.4e-176 623.2 426 74.2
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.4e-176 623.2 429 73.2
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.9e-176 622.9 421 74.1
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.9e-176 622.9 428 74.5
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.2e-176 622.1 421 73.6
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.0e-176 620.9 421 73.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 9.2e-176 620.5 421 74.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.2e-176 620.5 421 73.2
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.2e-175 620.2 427 75.2
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.2e-175 620.2 421 74.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.7e-175 619.0 322 97.5
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 3.5e-175 618.6 421 74.8
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 4.6e-175 618.2 431 73.8
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 6.0e-175 617.8 429 73.9
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.8e-175 617.5 423 74.2
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 7.8e-175 617.5 431 73.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.0e-174 617.1 425 73.4
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.0e-174 617.1 427 72.6
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.7e-174 616.3 421 74.8
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 3.0e-174 615.5 421 73.2
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.9e-174 615.1 406 75.4
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.9e-174 615.1 427 74.2
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.9e-174 615.1 421 73.6
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 5.0e-174 614.8 423 74.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 6.6e-174 614.4 389 77.6
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 8.6e-174 614.0 421 74.1
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.5e-173 613.2 424 72.9
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.9e-173 612.8 421 72.9
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.9e-173 612.8 425 73.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 3.3e-173 612.1 421 72.9
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 3.3e-173 612.1 389 77.9
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.3e-173 611.7 389 78.4
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 7.3e-173 610.9 384 78.6
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 9.5e-173 610.5 407 75.2
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.6e-172 609.8 421 72.9
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.1e-172 609.4 425 72.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 4.7e-172 608.2 426 73.0
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.1e-171 607.1 427 71.9
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.1e-171 605.5 393 75.6
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 3.1e-171 605.5 392 75.5
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 6.8e-171 604.4 392 75.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.4e-170 602.1 438 69.9
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.4e-170 601.7 421 71.7
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 7.5e-170 600.9 426 72.8
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 9.9e-170 600.5 421 70.8
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.3e-169 600.1 431 71.7
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.7e-169 598.6 393 75.3
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 3.7e-169 598.6 423 71.4
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 3.7e-169 598.6 423 71.4
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 8.3e-169 597.4 421 71.5
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-168 596.3 430 71.2
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 2.1e-167 592.8 406 74.9
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 6.0e-167 591.3 404 74.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 6.0e-167 591.3 408 73.3
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.0e-166 590.5 424 72.2
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.0e-166 590.5 417 72.4
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.3e-166 590.1 406 72.4
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 2.3e-166 589.3 421 71.7
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 3.9e-166 588.6 371 78.4
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 5.1e-166 588.2 421 69.6
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.5e-165 585.9 423 72.3
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.2e-164 583.6 401 75.1
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.1e-164 582.8 403 72.2
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.8e-164 582.4 371 76.0
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 6.2e-164 581.3 419 72.1
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.2e-162 577.0 386 76.9
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.5e-162 576.6 333 90.7
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.0e-162 576.2 370 76.8
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 7.6e-162 574.3 354 79.4
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.9e-161 572.4 407 71.7
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 4.9e-161 571.6 419 67.8
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 4.1e-160 568.5 416 68.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 6.0e-159 564.7 335 82.7
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.8e-155 553.1 431 67.1
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.5e-154 550.1 379 73.6
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.8e-154 548.1 445 65.6
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 7.6e-154 547.7 423 65.0
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 9.9e-154 547.4 393 69.0
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.3e-153 547.0 370 70.8
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.9e-153 545.8 421 66.7
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 3.8e-153 545.4 415 69.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.1e-152 543.9 389 70.4
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 2.0e-146 523.1 450 62.4
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.7e-145 520.0 404 64.6
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.5e-143 512.3 315 81.0
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.8e-140 502.7 455 61.1
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.6e-138 496.1 342 74.3
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 3.4e-138 495.7 411 65.0
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.9e-136 490.0 434 60.6
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 3.5e-135 485.7 424 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.8e-131 473.4 410 60.5
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.4e-128 463.8 425 56.9
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.4e-128 463.8 367 67.0
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.4e-123 447.2 231 98.3
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 4.1e-123 445.7 389 59.4
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 8.5e-121 438.0 399 61.2
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-120 436.8 366 64.2
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 5.0e-113 412.1 241 83.4
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.7e-111 405.6 335 63.9
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.3e-109 399.4 271 72.7
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.1e-99 367.9 390 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.5e-98 362.5 410 50.0
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 4.4e-93 345.9 211 81.5
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.2e-87 327.8 390 49.7
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 4.1e-83 312.8 273 59.3
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.2e-80 302.0 196 74.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 3.3e-72 276.6 347 51.3
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 3.4e-69 266.5 151 84.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 4.0e-62 243.0 302 46.0
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 2.6e-61 240.4 397 37.3
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.7e-60 236.5 222 57.7
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.8e-54 217.6 214 55.6
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 4.9e-52 209.5 304 40.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.6e-47 194.5 182 57.7
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.8e-46 191.0 118 80.5
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.3e-44 184.9 424 35.1
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 5.6e-32 142.9 118 66.9
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.8e-30 137.9 127 60.6
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 1.8e-30 137.9 132 54.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.2e-27 127.1 75 81.3
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 3.5e-26 123.6 81 82.7
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 7.9e-26 122.5 72 80.6
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.4e-22 110.9 85 62.4
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.4e-20 102.4 75 64.0
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-18 97.4 61 72.1
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.0e-17 95.5 74 68.9
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.9e-16 91.3 54 77.8
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.4e-11 75.1 60 61.7
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 3.2e-11 73.9 123 39.0
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 5.1e-09 66.6 137 36.5
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 3.7e-07 60.5 55 60.0
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 4.8e-07 60.1 35 77.1
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 6.9e-06 56.2 36 72.2


User provided reference genes

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