Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09903 Brassica carinata HOM05D005891 ORTHO05D032421 2.3e-60 235.3 115 100.0
C04p35350 Brassica napus HOM05D005891 ORTHO05D032421 6.9e-49 197.2 94 98.9
BolC4t25089H Brassica oleracea HOM05D005891 ORTHO05D032421 6.9e-49 197.2 94 98.9
CARHR119890 Cardamine hirsuta HOM05D005891 ORTHO05D007214 1.8e-25 119.4 92 69.6
BcaC07g40068 Brassica carinata HOM05D005891 ORTHO05D007214 2.4e-25 119.0 93 68.8
Thhalv10005871m.g Eutrema salsugineum HOM05D005891 ORTHO05D007214 4.1e-25 118.2 91 69.2
A09p50110 Brassica napus HOM05D005891 ORTHO05D007214 6.9e-25 117.5 91 67.0
BraA09t40462Z Brassica rapa HOM05D005891 ORTHO05D007214 6.9e-25 117.5 91 67.0
Sp5g05400 Schrenkiella parvula HOM05D005891 ORTHO05D007214 9.0e-25 117.1 91 69.2
AL5G38660 Arabidopsis lyrata HOM05D005891 ORTHO05D007214 1.5e-24 116.3 92 68.5
Carub.0005s2399 Capsella rubella HOM05D005891 ORTHO05D007214 3.4e-24 115.2 92 66.3
AT3G57170 Arabidopsis thaliana HOM05D005891 ORTHO05D007214 1.3e-23 113.2 92 66.3
BcaC07g40040 Brassica carinata HOM05D005891 ORTHO05D007214 2.9e-23 112.1 91 67.0
C08p32480 Brassica napus HOM05D005891 ORTHO05D007214 2.9e-23 112.1 91 67.0
BolC8t50864H Brassica oleracea HOM05D005891 ORTHO05D007214 2.9e-23 112.1 91 67.0
Aa31LG10G12080 Aethionema arabicum HOM05D005891 ORTHO05D007214 1.1e-22 110.2 91 64.8
THA.LOC104824423 Tarenaya hassleriana HOM05D005891 ORTHO05D007214 1.1e-19 100.1 85 63.5
Haze_19761 Corylus avellana HOM05D005891 ORTHO05D007214 1.1e-17 93.6 99 45.5
CANSAT80G2643 Cannabis sativa HOM05D005891 ORTHO05D007214 4.1e-17 91.7 92 50.0
Prupe.4G274500 Prunus persica HOM05D005891 ORTHO05D007214 1.2e-16 90.1 75 54.7
Ciclev10031083m.g Citrus clementina HOM05D005891 ORTHO05D007214 1.5e-16 89.7 92 50.0
Ciclev10025261m.g Citrus clementina HOM05D005891 ORTHO05D007214 2.0e-16 89.4 92 50.0
Sabra06G0030700 Salix brachista HOM05D005891 ORTHO05D007214 2.0e-16 89.4 92 51.1
Hund19119 Selenicereus undatus HOM05D005891 ORTHO05D007214 3.4e-16 88.6 92 47.8
COL.COLO4_20863 Corchorus olitorius HOM05D005891 ORTHO05D007214 4.5e-16 88.2 92 50.0
Dinv14832 Davidia involucrata HOM05D005891 ORTHO05D007214 4.5e-16 88.2 92 48.9
Lj5A499T12 Lonicera japonica HOM05D005891 ORTHO05D007214 4.5e-16 88.2 91 49.5
MD12G1089200 Malus domestica HOM05D005891 ORTHO05D007214 4.5e-16 88.2 73 56.2
MD14G1081800 Malus domestica HOM05D005891 ORTHO05D007214 4.5e-16 88.2 73 54.8
Sc19g0008430 Simmondsia chinensis HOM05D005891 ORTHO05D007214 4.5e-16 88.2 92 48.9
Thecc.04G215900 Theobroma cacao HOM05D005891 ORTHO05D007214 5.9e-16 87.8 92 50.0
Potri.006G044500 Populus trichocarpa HOM05D005891 ORTHO05D007214 7.7e-16 87.4 92 51.1
CiPaw.09G043200 Carya illinoinensis HOM05D005891 ORTHO05D007214 1.0e-15 87.0 92 47.8
Gohir.D09G195600 Gossypium hirsutum HOM05D005891 ORTHO05D007214 1.0e-15 87.0 92 50.0
Gorai.006G219000 Gossypium raimondii HOM05D005891 ORTHO05D007214 1.0e-15 87.0 92 50.0
Manes.09G010000 Manihot esculenta HOM05D005891 ORTHO05D007214 1.0e-15 87.0 89 50.6
CANSAT80G2523 Cannabis sativa HOM05D005891 ORTHO05D007214 1.3e-15 86.7 92 48.9
Ah.13g076700 Amaranthus hybridus HOM05D005891 ORTHO05D007214 3.8e-15 85.1 92 48.9
GSVIVG01033562001 Vitis vinifera HOM05D005891 ORTHO05D007214 3.8e-15 85.1 101 48.5
Cfa016743 Carpinus fangiana HOM05D005891 ORTHO05D007214 5.0e-15 84.7 91 44.0
Gohir.A09G201700 Gossypium hirsutum HOM05D005891 ORTHO05D007214 6.5e-15 84.3 92 48.9
MD07G1151600 Malus domestica HOM05D005891 ORTHO05D007214 6.5e-15 84.3 81 49.4
FAN14G5310 Fragaria x ananassa HOM05D005891 ORTHO05D007214 8.5e-15 84.0 73 56.2
FvH4_6g24900 Fragaria vesca HOM05D005891 ORTHO05D007214 1.1e-14 83.6 73 56.2
AUR62026144 Chenopodium quinoa HOM05D005891 ORTHO05D007214 1.4e-14 83.2 92 47.8
Atru.chr11.2650 Acer truncatum HOM05D005891 ORTHO05D007214 1.9e-14 82.8 92 47.8
FAN02G2450 Fragaria x ananassa HOM05D005891 ORTHO05D007214 1.9e-14 82.8 73 54.8
RcHm_v2.0_Chr2g0124601 Rosa chinensis HOM05D005891 ORTHO05D007214 2.5e-14 82.4 73 54.8
ATR0580G208 Amborella trichopoda HOM05D005891 ORTHO05D007214 3.2e-14 82.0 100 42.0
Prupe.5G000500 Prunus persica HOM05D005891 ORTHO05D007214 3.2e-14 82.0 69 55.1
Duzib212G0478 Durio zibethinus HOM05D005891 ORTHO05D007214 5.5e-14 81.3 91 45.1
AUR62030390 Chenopodium quinoa HOM05D005891 ORTHO05D007214 7.2e-14 80.9 92 46.7
FAN05G1661 Fragaria x ananassa HOM05D005891 ORTHO05D007214 7.2e-14 80.9 73 53.4
Rhsim03G0031400 Rhododendron simsii HOM05D005891 ORTHO05D007214 7.2e-14 80.9 92 44.6
Nn2g15043 Nelumbo nucifera HOM05D005891 ORTHO05D007214 1.2e-13 80.1 92 46.7
vmacro21952 Vaccinium macrocarpon HOM05D005891 ORTHO05D007214 1.6e-13 79.7 92 43.5
PGR031G3404 Punica granatum HOM05D005891 ORTHO05D007214 2.1e-13 79.3 73 49.3
TWI53G1500 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 2.1e-13 79.3 92 43.5
Sed0000553 Sechium edule HOM05D005891 ORTHO05D007214 3.6e-13 78.6 91 46.2
Hma1.2p1_0275F.1_g110840 Hydrangea macrophylla HOM05D005891 ORTHO05D007214 4.6e-13 78.2 92 45.7
QL07p004892 Quercus lobata HOM05D005891 ORTHO05D007214 7.9e-13 77.4 92 42.4
EL10Ac3g07174 Beta vulgaris HOM05D005891 ORTHO05D007214 1.0e-12 77.0 92 44.6
Cc06_g18470 Coffea canephora HOM05D005891 ORTHO05D007214 1.4e-12 76.6 108 38.9
SEGI_09087 Sequoiadendron giganteum HOM05D005891 ORTHO05D007214 1.8e-12 76.3 84 46.4
ClCG04G004100 Citrullus lanatus HOM05D005891 ORTHO05D007214 2.3e-12 75.9 94 44.7
SGA_v2.0_scaffold94G28504 Striga asiatica HOM05D005891 ORTHO05D007214 2.3e-12 75.9 76 47.4
arahy.Tifrunner.gnm1.ann1.324ZN3 Arachis hypogaea HOM05D005891 ORTHO05D007214 3.0e-12 75.5 100 44.0
Oeu015292.1 Olea europaea HOM05D005891 ORTHO05D007214 3.0e-12 75.5 92 44.6
arahy.Tifrunner.gnm1.ann1.68N1MV Arachis hypogaea HOM05D005891 ORTHO05D007214 3.9e-12 75.1 100 44.0
Eucgr.A02290 Eucalyptus grandis HOM05D005891 ORTHO05D007214 5.1e-12 74.7 69 53.6
TAR633G2073 Trochodendron aralioides HOM05D005891 ORTHO05D007214 6.7e-12 74.3 91 40.7
Aqoxy7G02967 Aquilegia oxysepala HOM05D005891 ORTHO05D007214 8.8e-12 73.9 88 43.2
Migut.K00113 Erythranthe guttata HOM05D005891 ORTHO05D007214 8.8e-12 73.9 92 45.7
Psat3g075960 Pisum sativum HOM05D005891 ORTHO05D007214 8.8e-12 73.9 92 44.6
Actinidia39186 Actinidia chinensis HOM05D005891 ORTHO05D007214 1.1e-11 73.6 92 43.5
CAN.G1237.25 Capsicum annuum HOM05D005891 ORTHO05D007214 1.1e-11 73.6 73 45.2
CsaV3_4G022060 Cucumis sativus L. HOM05D005891 ORTHO05D007214 1.1e-11 73.6 92 45.7
Nitab4.5_0008674g0030 Nicotiana tabacum HOM05D005891 ORTHO05D007214 1.1e-11 73.6 73 45.2
Phvul.001G127800 Phaseolus vulgaris HOM05D005891 ORTHO05D007214 1.1e-11 73.6 92 41.3
Lalb_Chr20g0110281 Lupinus albus HOM05D005891 ORTHO05D007214 1.5e-11 73.2 92 41.3
Nitab4.5_0001618g0090 Nicotiana tabacum HOM05D005891 ORTHO05D007214 1.5e-11 73.2 73 46.6
Lj1g0021626 Lotus japonicus HOM05D005891 ORTHO05D007214 2.0e-11 72.8 87 43.7
Nn7g36464 Nelumbo nucifera HOM05D005891 ORTHO05D007214 2.0e-11 72.8 87 42.5
Glyma.18G212600 Glycine max HOM05D005891 ORTHO05D007214 2.5e-11 72.4 92 42.4
PSO170G1429 Papaver somniferum HOM05D005891 ORTHO05D007214 2.5e-11 72.4 87 41.4
Solyc04g017700.4 Solanum lycopersicum HOM05D005891 ORTHO05D007214 2.5e-11 72.4 73 45.2
Sopen04g008780 Solanum pennellii HOM05D005891 ORTHO05D007214 2.5e-11 72.4 73 45.2
PGSC0003DMG402007625 Solanum tuberosum HOM05D005891 ORTHO05D007214 2.5e-11 72.4 73 45.2
Peaxi162Scf00130g01129 Petunia axillaris HOM05D005891 ORTHO05D007214 3.3e-11 72.0 76 43.4
TPR.G32752 Trifolium pratense HOM05D005891 ORTHO05D007214 3.3e-11 72.0 92 43.5
Medtr7g090600 Medicago truncatula HOM05D005891 ORTHO05D007214 4.3e-11 71.6 91 44.0
PSO063G0854 Papaver somniferum HOM05D005891 ORTHO05D007214 4.3e-11 71.6 87 41.4
MBI16_g31793_MAGBIO Magnolia biondii HOM05D005891 ORTHO05D007214 5.7e-11 71.2 88 43.2
SalBow1G2481 Salvia bowleyana HOM05D005891 ORTHO05D007214 9.7e-11 70.5 90 43.3
SalBow4G2335 Salvia bowleyana HOM05D005891 ORTHO05D007214 1.7e-10 69.7 90 43.3
Glyma.03G131800 Glycine max HOM05D005891 ORTHO05D007214 2.2e-10 69.3 92 41.3
DCAR_002883 Daucus carota HOM05D005891 ORTHO05D007214 8.2e-10 67.4 92 42.4
CDE08G1332 Ceratophyllum demersum HOM05D005891 ORTHO05D007214 1.8e-09 66.2 86 43.0
Zm00001eb364590 Zea mays HOM05D005891 ORTHO05D007214 1.8e-09 66.2 88 39.8
MELO3C014212.2 Cucumis melo HOM05D005891 ORTHO05D007214 2.4e-09 65.9 92 42.4
VMungo1383G0485 Vigna mungo HOM05D005891 ORTHO05D007214 2.4e-09 65.9 84 40.5
Cpa.g.sc66.74 Carica papaya HOM05D005891 ORTHO05D007214 4.1e-09 65.1 74 44.6
Ca_08420_v3 Cicer arietinum L. HOM05D005891 ORTHO05D007214 5.3e-09 64.7 92 40.2
Pp3c24_1230 Physcomitrium patens HOM05D005891 ORTHO05D007214 6.9e-09 64.3 69 42.0
unitig_748.g7229 Utricularia gibba HOM05D005891 ORTHO05D007214 1.2e-08 63.5 89 40.4
Mapoly0019s0088 Marchantia polymorpha HOM05D005891 ORTHO05D007214 5.9e-08 61.2 69 39.1
Lsat_1_v5_gn_3_23040 Lactuca sativa HOM05D005891 ORTHO05D007214 1.0e-07 60.5 90 42.2
ECA246G3700 Erigeron canadensis HOM05D005891 ORTHO05D007214 1.7e-07 59.7 92 41.3
SMO367G0314 Selaginella moellendorffii HOM05D005891 ORTHO05D007214 2.2e-07 59.3 98 35.7
HanXRQChr17g0536551 Helianthus annuus HOM05D005891 ORTHO05D007214 3.8e-07 58.5 92 40.2
HPP92_010949 Vanilla planifolia HOM05D005891 ORTHO05D007214 3.8e-07 58.5 80 41.2


User provided reference genes

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