Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 1.3e-58 229.6 122 100.0
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 1.3e-58 229.6 122 100.0
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 1.3e-58 229.6 122 100.0
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 6.8e-55 217.2 122 94.3
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 2.0e-54 215.7 122 95.1
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 2.0e-54 215.7 122 95.1
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 2.1e-35 152.5 125 71.2
Sp7g02750 Schrenkiella parvula HOM05D007413 ORTHO05D009357 7.8e-35 150.6 126 71.4
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 1.7e-26 122.9 120 63.3
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 9.6e-25 117.1 119 66.4
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 1.4e-23 113.2 120 61.7
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 1.5e-22 109.8 130 61.5
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 2.3e-18 95.9 126 57.1
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 3.9e-18 95.1 122 53.3
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 3.3e-17 92.0 126 52.4
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 6.9e-15 84.3 126 47.6
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 4.9e-13 78.2 126 46.8
THA.LOC109116393 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 2.7e-11 72.4 109 45.0
THA.LOC104825781 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 3.9e-10 68.6 109 41.3
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 1.5e-09 66.6 103 40.8
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 1.5e-09 66.6 76 48.7
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 3.3e-09 65.5 120 40.8
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 4.3e-09 65.1 97 39.2
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 5.6e-09 64.7 81 44.4
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 2.8e-08 62.4 75 48.0
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 3.7e-08 62.0 125 36.0
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 4.8e-08 61.6 111 42.3
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 6.2e-08 61.2 82 42.7
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 6.2e-08 61.2 69 47.8
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 8.1e-08 60.8 94 43.6
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 1.1e-07 60.5 81 49.4
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 1.1e-07 60.5 122 41.0
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.4e-07 60.1 69 49.3
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.4e-07 60.1 69 49.3
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 1.4e-07 60.1 67 50.7
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 1.4e-07 60.1 104 39.4
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 1.8e-07 59.7 80 46.2
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 2.4e-07 59.3 112 39.3
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 3.1e-07 58.9 113 38.1
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 4.0e-07 58.5 75 49.3
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 5.3e-07 58.2 70 45.7
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 6.9e-07 57.8 101 37.6
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 9.0e-07 57.4 117 38.5
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 9.0e-07 57.4 119 38.7
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 9.0e-07 57.4 121 38.0
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 1.2e-06 57.0 106 41.5
Lalb_Chr21g0318381 Lupinus albus HOM05D007413 ORTHO05D009357 1.5e-06 56.6 74 43.2
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 2.0e-06 56.2 108 37.0
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 2.0e-06 56.2 108 37.0
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 2.0e-06 56.2 100 43.0
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 2.6e-06 55.8 113 38.1
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 2.6e-06 55.8 111 36.9
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 2.6e-06 55.8 101 37.6
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 3.4e-06 55.5 71 45.1
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.4e-06 55.5 105 38.1
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 4.5e-06 55.1 110 37.3
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 4.5e-06 55.1 79 44.3
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 5.8e-06 54.7 102 39.2
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 7.6e-06 54.3 94 38.3
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 7.6e-06 54.3 99 42.4
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 7.6e-06 54.3 117 35.9
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 7.6e-06 54.3 128 34.4
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 7.6e-06 54.3 108 35.2
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 7.6e-06 54.3 110 36.4
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 1.0e-05 53.9 67 40.3
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.0e-05 53.9 113 38.9


User provided reference genes

Program Settings