Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 5.4e-122 441.0 228 100.0
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 4.9e-99 364.8 282 74.5
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 7.1e-82 307.8 231 74.9
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 3.0e-80 302.4 290 63.1
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 3.9e-80 302.0 288 64.6
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.1e-79 300.4 288 62.8
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 9.7e-79 297.4 288 62.2
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 8.2e-78 294.3 286 62.9
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 8.2e-78 294.3 286 62.9
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 5.3e-77 291.6 286 61.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.0e-75 287.3 285 61.1
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.9e-74 283.1 290 60.7
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 2.3e-72 276.2 285 60.7
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 5.7e-71 271.6 291 57.7
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.7e-62 243.4 290 53.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.0e-59 234.2 267 56.2
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 8.8e-56 221.1 279 50.5
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.7e-54 216.9 290 51.0
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.0e-51 207.6 267 50.2
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.1e-50 204.1 254 49.2
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 7.2e-50 201.4 218 56.0
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 2.7e-49 199.5 236 52.5
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 3.6e-49 199.1 264 48.5
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.6e-49 199.1 263 47.5
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.7e-49 198.7 226 53.1
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.0e-48 197.6 263 47.1
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 1.4e-48 197.2 228 52.2
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.8e-48 196.8 228 52.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.8e-48 196.8 228 51.8
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.8e-48 196.8 222 54.5
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.8e-48 196.8 219 52.5
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 2.3e-48 196.4 243 51.4
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.3e-48 196.4 259 48.3
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 4.0e-48 195.7 216 55.1
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 4.0e-48 195.7 251 50.6
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 4.0e-48 195.7 231 52.4
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 5.2e-48 195.3 213 55.9
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 5.2e-48 195.3 282 46.1
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 6.8e-48 194.9 237 52.3
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 6.8e-48 194.9 219 53.9
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 8.8e-48 194.5 259 46.7
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.5e-47 193.7 214 56.5
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.5e-47 193.7 271 48.3
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 2.0e-47 193.4 216 54.2
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.6e-47 193.0 224 52.7
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 9.8e-47 191.0 227 52.0
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 9.8e-47 191.0 225 52.9
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 9.8e-47 191.0 242 50.4
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 9.8e-47 191.0 250 50.4
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 1.3e-46 190.7 211 54.5
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.3e-46 190.7 228 52.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 2.8e-46 189.5 237 49.4
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.8e-46 189.5 222 52.7
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 2.8e-46 189.5 222 52.3
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.7e-46 189.1 204 54.4
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 4.8e-46 188.7 237 51.9
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.1e-45 187.6 222 52.3
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.1e-45 187.6 226 53.5
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.4e-45 187.2 218 51.4
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.4e-45 187.2 218 51.4
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.4e-45 187.2 218 51.4
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.8e-45 186.8 224 53.6
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.8e-45 186.8 224 53.6
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 2.4e-45 186.4 216 53.2
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 4.1e-45 185.7 233 49.8
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 4.1e-45 185.7 273 46.5
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 5.4e-45 185.3 223 50.7
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 7.0e-45 184.9 226 49.6
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 9.1e-45 184.5 209 53.6
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.1e-45 184.5 217 51.2
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 9.1e-45 184.5 212 53.3
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 9.1e-45 184.5 218 50.9
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.0e-44 183.3 231 51.9
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 2.7e-44 183.0 221 52.0
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.7e-44 183.0 225 48.0
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 4.5e-44 182.2 215 52.1
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 1.7e-43 180.3 206 53.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 2.2e-43 179.9 241 49.0
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.5e-42 177.2 242 48.3
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.5e-42 177.2 221 48.4
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.5e-42 177.2 222 46.4
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.5e-42 176.4 199 54.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 3.2e-42 176.0 195 55.4
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 4.2e-42 175.6 233 48.9
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 4.2e-42 175.6 233 48.9
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.2e-41 174.1 148 65.5
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.6e-41 173.7 159 62.3
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 2.1e-41 173.3 207 48.3
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 3.6e-41 172.6 176 59.1
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.7e-41 172.2 223 49.8
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 6.1e-41 171.8 209 49.3
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.4e-40 170.6 211 50.7
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 5.2e-40 168.7 184 55.4
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 2.6e-39 166.4 210 47.6
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 3.4e-39 166.0 215 48.4
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.7e-38 162.5 158 59.5
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.4e-37 160.6 184 52.2
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 3.1e-37 159.5 258 43.0
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 7.7e-36 154.8 140 60.7
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 7.7e-36 154.8 184 50.5
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 1.7e-35 153.7 199 45.7
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.8e-35 152.5 171 55.6
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 3.8e-35 152.5 171 55.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.5e-34 150.6 202 44.6
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.9e-34 150.2 194 46.9
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 5.5e-34 148.7 189 47.1
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 1.0e-32 144.4 319 36.7
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.4e-31 139.4 97 74.2
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 7.5e-31 138.3 116 64.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.4e-29 134.0 96 75.0
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 9.2e-29 131.3 96 74.0
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.8e-25 119.8 114 57.9
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.3e-24 116.7 104 59.6
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 4.9e-22 109.0 132 44.7
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 4.1e-21 105.9 147 49.0
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 5.4e-21 105.5 113 49.6
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 6.0e-20 102.1 159 46.5
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 5.0e-19 99.0 50 96.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 6.6e-19 98.6 51 94.1
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 8.6e-19 98.2 239 33.5
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 1.6e-17 94.0 124 43.5
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.5e-15 87.4 79 60.8
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.4e-13 80.1 45 82.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 5.4e-13 79.0 77 57.1
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 7.1e-13 78.6 77 57.1
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 3.5e-12 76.3 59 67.8


User provided reference genes

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