Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 8.1e-113 410.6 235 100.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 8.1e-113 410.6 235 100.0
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 2.0e-111 406.0 235 99.1
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 2.0e-111 406.0 235 99.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 7.8e-108 394.0 239 96.2
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.5e-103 379.8 235 91.1
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.1e-84 316.2 236 82.6
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.3e-75 286.2 238 71.8
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 7.9e-68 261.2 239 68.6
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.8e-64 250.0 252 65.5
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.9e-63 245.0 264 65.2
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.6e-60 235.7 243 64.2
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 6.1e-60 235.0 265 60.8
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.1e-58 230.7 242 61.2
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 4.3e-58 228.8 244 62.3
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 8.5e-54 214.5 245 58.8
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 7.2e-53 211.5 259 56.8
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 6.7e-51 204.9 259 52.9
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 5.2e-43 178.7 247 51.4
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-40 171.0 250 50.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.0e-39 166.8 250 50.8
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 2.7e-39 166.4 248 50.4
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.3e-38 164.1 258 48.1
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.3e-38 164.1 243 49.4
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.8e-38 162.5 240 47.9
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-37 160.6 250 47.2
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-37 160.6 248 49.6
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 7.2e-37 158.3 253 47.4
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.8e-35 153.7 242 46.7
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 9.8e-34 147.9 250 48.8
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-32 144.4 216 49.5
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.6e-28 130.6 249 45.0
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.1e-28 130.2 235 42.1
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 2.7e-28 129.8 235 42.1
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.6e-28 129.4 232 45.7
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.7e-28 129.0 236 41.5
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.0e-27 127.9 236 43.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 3.0e-27 126.3 250 40.4
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 5.2e-27 125.6 235 42.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.2e-26 124.4 236 41.5
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 2.6e-26 123.2 242 43.8
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 7.5e-26 121.7 232 43.1
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 7.5e-26 121.7 239 42.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 9.8e-26 121.3 239 42.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.7e-25 120.6 238 43.7
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.2e-25 120.2 236 40.3
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 4.9e-25 119.0 235 43.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 6.3e-25 118.6 238 42.0
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.4e-24 117.5 240 42.5
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.8e-24 117.1 238 41.2
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.4e-24 116.7 236 41.9
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 3.1e-24 116.3 234 41.5
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 3.1e-24 116.3 247 40.9
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 9.2e-24 114.8 236 39.8
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.2e-23 114.4 212 42.9
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.6e-23 114.0 234 41.5
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.6e-23 114.0 235 40.0
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.6e-23 114.0 232 39.7
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.6e-23 114.0 240 39.6
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.6e-23 114.0 236 39.4
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.0e-23 113.6 236 40.7
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 2.7e-23 113.2 235 42.1
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.7e-23 113.2 237 40.5
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.7e-23 113.2 236 39.4
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 3.5e-23 112.8 242 38.4
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.5e-23 112.8 238 41.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 5.9e-23 112.1 234 39.3
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.0e-22 111.3 235 42.6
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-22 110.9 234 39.3
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 1.7e-22 110.5 221 42.5
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-22 110.5 238 40.8
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.9e-22 109.8 240 38.3
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.9e-21 107.1 238 38.7
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 5.6e-21 105.5 243 39.5
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 5.6e-21 105.5 233 37.8
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 5.6e-21 105.5 244 38.9
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 5.6e-21 105.5 231 39.0
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 7.3e-21 105.1 232 38.8
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-20 104.4 227 40.1
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 2.1e-20 103.6 232 39.2
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.8e-20 103.2 242 39.3
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 4.7e-20 102.4 226 38.5
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.0e-19 101.3 214 41.6
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 2.3e-19 100.1 205 39.0
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.0e-19 99.8 240 38.3
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 4.0e-19 99.4 228 38.6
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.2e-19 99.0 235 37.9
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 6.8e-19 98.6 244 35.2
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.9e-19 98.2 242 36.8
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.9e-19 98.2 242 36.8
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.5e-18 97.4 241 41.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.6e-18 96.7 237 38.4
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 5.7e-18 95.5 230 38.7
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-17 94.0 218 38.1
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 2.2e-17 93.6 211 38.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.9e-17 93.2 255 35.7
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.9e-17 92.4 218 37.6
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.4e-17 92.0 271 35.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.3e-17 91.7 216 38.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.8e-16 90.5 237 35.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.4e-16 90.1 234 38.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.1e-16 89.4 244 35.7
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 7.0e-16 88.6 241 35.3
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.2e-15 87.8 200 37.5
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 2.7e-15 86.7 204 42.6
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 4.6e-15 85.9 178 38.2
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 7.8e-15 85.1 207 37.7
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.0e-14 84.7 237 35.4
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.7e-14 84.0 241 36.1
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.7e-14 84.0 214 37.4
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.0e-14 83.2 238 39.5
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.3e-13 78.6 264 30.3
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 7.3e-13 78.6 207 33.8
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.8e-12 76.6 210 40.0
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.2e-12 75.5 202 35.6
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 6.2e-12 75.5 233 34.8
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.0e-11 74.7 196 36.7
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.3e-11 73.6 128 49.2
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 4.0e-11 72.8 201 36.3
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 6.8e-11 72.0 147 38.8
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 8.9e-11 71.6 240 32.9
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.6e-10 70.1 196 35.7
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.6e-10 70.1 121 40.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.4e-10 69.3 302 27.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.3e-09 67.8 201 36.3
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.3e-09 67.8 196 34.2
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.7e-09 67.4 127 40.2
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.7e-09 66.2 143 39.2
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 3.7e-09 66.2 205 32.2
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 8.3e-09 65.1 315 26.7
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 1.4e-08 64.3 268 31.3
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.4e-08 63.5 172 34.9
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 5.4e-08 62.4 238 30.7
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 5.4e-08 62.4 139 38.8
A01p38570 Brassica napus HOM05D061175 ORTHO05D005518 1.2e-07 61.2 48 72.9
A01p38790 Brassica napus HOM05D061175 ORTHO05D005518 1.2e-07 61.2 48 72.9
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.6e-07 60.8 202 30.2
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-07 60.1 182 34.1
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.0e-06 56.6 196 34.2
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.0e-06 56.6 169 32.0
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 3.0e-06 56.6 169 32.5


User provided reference genes

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