Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 5.4e-227 790.8 444 100.0
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 5.4e-227 790.8 444 100.0
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 2.0e-213 745.7 480 90.6
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 2.1e-202 709.1 479 88.3
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 2.0e-197 692.6 479 86.2
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 9.0e-190 667.2 482 83.4
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 4.5e-149 531.9 489 68.9
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 1.0e-137 494.2 479 64.3
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 6.2e-122 441.8 481 59.5
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 4.2e-110 402.5 480 56.7
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 3.0e-100 369.8 488 52.5
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 3.0e-100 369.8 493 51.9
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 1.5e-99 367.5 490 55.1
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 2.1e-93 347.1 518 48.6
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.0e-92 344.7 485 50.7
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 5.1e-92 342.4 493 50.7
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.5e-91 340.9 492 50.0
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 7.4e-91 338.6 492 49.2
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 3.4e-88 329.7 493 49.9
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 1.8e-81 307.4 498 47.2
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 2.0e-80 303.9 498 47.2
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 4.5e-80 302.8 496 47.4
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 6.5e-79 298.9 497 46.9
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 6.5e-79 298.9 496 46.8
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 1.1e-75 288.1 492 45.7
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 6.1e-61 239.2 488 38.9
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 1.0e-60 238.4 488 39.5
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 1.3e-58 231.5 497 37.8
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 3.1e-57 226.9 491 37.7
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 4.1e-57 226.5 490 38.4
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 1.0e-55 221.9 503 38.6
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 6.5e-55 219.2 436 43.6
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 1.2e-53 214.9 504 38.5
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 2.7e-53 213.8 495 38.2
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 7.4e-51 205.7 493 35.5
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 4.1e-49 199.9 498 37.3
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.6e-48 198.0 469 36.2
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 1.0e-47 195.3 503 36.6
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 3.8e-47 193.4 491 33.8
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 8.5e-47 192.2 495 33.7
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.1e-46 191.8 499 35.5
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 7.2e-46 189.1 503 34.6
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 1.6e-45 188.0 479 35.3
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.1e-45 187.6 499 34.9
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 4.7e-45 186.4 405 37.0
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 6.8e-44 182.6 499 33.5
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 4.4e-43 179.9 489 33.7
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 5.7e-43 179.5 481 33.1
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 7.5e-43 179.1 466 33.9
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.8e-42 177.2 487 34.7
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 6.3e-42 176.0 498 34.3
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 5.4e-41 172.9 495 33.9
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 1.6e-40 171.4 490 33.1
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 1.6e-40 171.4 490 33.1
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 1.6e-40 171.4 493 34.5
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 1.0e-39 168.7 488 33.0
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.7e-39 167.9 472 33.7
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 8.5e-39 165.6 495 32.7
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 3.2e-38 163.7 489 32.9
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 4.2e-38 163.3 489 32.9
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 4.2e-38 163.3 494 34.6
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 5.5e-38 162.9 475 32.4
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 7.2e-38 162.5 448 32.1
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 1.6e-37 161.4 493 33.7
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 2.1e-37 161.0 494 32.6
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.3e-36 157.5 489 31.5
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 2.3e-36 157.5 488 32.8
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 3.0e-36 157.1 488 32.6
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 6.8e-36 156.0 484 32.0
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 8.8e-36 155.6 485 32.4
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 2.0e-35 154.5 502 30.9
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 2.2e-34 151.0 479 31.1
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 3.7e-34 150.2 495 31.1
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.4e-33 148.3 483 32.5
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 2.4e-33 147.5 465 31.0
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 3.1e-33 147.1 491 31.2
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 5.4e-33 146.4 400 31.8
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 1.2e-32 145.2 398 31.9
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 1.6e-32 144.8 483 30.4
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 2.7e-32 144.1 503 32.4
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 2.7e-32 144.1 489 31.5
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.5e-32 143.7 483 30.2
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 4.5e-32 143.3 481 30.1
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.0e-31 142.1 483 32.1
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.7e-31 141.4 483 31.9
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 2.9e-31 140.6 490 29.8
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 3.8e-31 140.2 482 32.4
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 8.6e-31 139.0 485 30.1
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 8.6e-31 139.0 393 32.3
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.5e-30 138.3 458 29.7
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.5e-30 138.3 486 30.2
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 3.3e-30 137.1 480 31.5
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 2.1e-29 134.4 443 29.8
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 2.1e-29 134.4 494 31.4
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 2.8e-29 134.0 498 31.3
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 4.7e-29 133.3 436 31.4
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 8.0e-29 132.5 493 30.2
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 2.3e-28 131.0 513 32.6
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 4.0e-28 130.2 405 33.6
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 3.4e-27 127.1 482 31.1
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 2.9e-26 124.0 391 30.7
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 2.9e-26 124.0 480 28.1
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.8e-25 121.3 493 29.8
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 4.1e-25 120.2 491 26.9
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 9.2e-25 119.0 431 29.2
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.0e-24 117.9 487 29.4
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 2.7e-24 117.5 500 29.8
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 5.9e-24 116.3 471 29.5
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 7.8e-24 115.9 487 29.2
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 8.6e-23 112.5 501 29.5
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 1.5e-22 111.7 464 28.0
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 7.3e-22 109.4 482 28.6
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 5.2e-20 103.2 218 39.0
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 1.5e-19 101.7 357 30.5
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.2e-18 97.8 474 27.4
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 8.3e-18 95.9 492 28.3
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 1.1e-17 95.5 497 28.2
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 1.4e-17 95.1 385 29.4
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.4e-17 94.4 435 27.4
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 3.2e-17 94.0 193 36.3
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 7.0e-17 92.8 406 28.8
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 1.6e-16 91.7 504 27.4
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 2.7e-16 90.9 435 28.3
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 3.5e-16 90.5 463 28.9
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 7.8e-16 89.4 407 29.0
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 2.3e-15 87.8 178 37.1
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 2.8e-13 80.9 496 26.8
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 1.1e-12 79.0 396 26.5
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 1.4e-12 78.6 420 26.0
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 2.3e-12 77.8 500 25.4
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 8.9e-12 75.9 215 30.2
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.6e-11 74.3 209 33.5
CARHR214590 Cardamine hirsuta HOM05D004905 ORTHO05D005456 4.4e-11 73.6 77 59.7
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 4.4e-11 73.6 244 29.1
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 2.2e-10 71.2 237 29.1
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 1.1e-09 68.9 349 27.8
AUR62016892 Chenopodium quinoa HOM05D022647 ORTHO05D005456 1.9e-09 68.2 358 28.2
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 5.4e-09 66.6 301 25.6
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 9.2e-09 65.9 377 26.5
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 2.7e-08 64.3 484 24.8
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 3.5e-08 63.9 262 26.3
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 6.0e-08 63.2 178 30.3
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 6.0e-08 63.2 491 23.6
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.0e-07 62.4 368 25.8
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 6.6e-07 59.7 139 35.3
arahy.Tifrunner.gnm1.ann1.5CFI8R Arachis hypogaea HOM05D001827 ORTHO05D001790 1.9e-06 58.2 374 24.1
arahy.Tifrunner.gnm1.ann1.21F8WZ Arachis hypogaea HOM05D001827 ORTHO05D001790 4.3e-06 57.0 374 23.8
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 4.3e-06 57.0 337 27.3


User provided reference genes

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