Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 5.7e-279 963.8 544 100.0
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 2.6e-255 885.2 550 92.2
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 4.0e-248 861.3 559 91.1
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 4.9e-246 854.4 560 90.7
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 2.6e-239 832.0 559 88.4
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 6.4e-238 827.4 559 88.0
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 1.2e-233 813.1 549 85.6
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 1.0e-211 740.3 553 80.7
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 6.7e-187 657.9 552 73.9
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 1.7e-185 653.3 546 74.0
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 2.4e-176 622.9 554 71.1
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 2.5e-141 506.5 558 60.4
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 9.8e-138 494.6 327 78.9
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 3.9e-134 482.6 542 58.3
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 1.4e-131 474.2 549 60.1
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 4.9e-121 439.1 517 57.4
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 3.2e-120 436.4 556 54.5
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 4.3e-117 426.0 498 56.2
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 2.8e-116 423.3 524 54.2
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 3.6e-116 422.9 556 54.7
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 6.9e-115 418.7 494 56.7
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 2.9e-113 413.3 554 52.3
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 4.6e-111 406.0 525 54.3
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 1.9e-109 400.6 497 55.5
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 3.3e-109 399.8 550 52.9
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 3.3e-109 399.8 487 54.8
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 5.6e-109 399.1 525 53.1
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 7.3e-109 398.7 520 52.9
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 1.1e-107 394.8 518 52.9
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 2.4e-107 393.7 552 52.0
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 6.9e-107 392.1 509 52.7
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 5.8e-106 389.0 549 51.5
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 9.9e-106 388.3 550 53.1
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 1.3e-105 387.9 561 51.3
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 3.2e-104 383.3 468 57.7
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 1.6e-103 380.9 523 51.6
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 3.5e-103 379.8 555 50.3
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 3.9e-102 376.3 421 57.5
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 5.1e-102 375.9 427 59.5
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 6.7e-102 375.6 524 51.7
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 8.7e-102 375.2 543 50.3
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 1.5e-101 374.4 452 55.8
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 6.9e-99 365.5 565 50.1
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 1.2e-98 364.8 556 41.0
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 7.6e-98 362.1 515 50.5
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 1.6e-95 354.4 530 48.3
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 2.1e-95 354.0 460 55.2
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 1.0e-94 351.7 544 49.4
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.8e-94 350.9 553 49.4
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 2.3e-94 350.5 475 54.9
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 3.9e-94 349.7 510 50.6
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 1.9e-93 347.4 489 50.9
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.9e-93 347.4 547 50.6
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 4.3e-93 346.3 543 49.7
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 7.4e-93 345.5 538 50.0
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 4.8e-92 342.8 464 53.4
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 5.3e-91 339.3 494 52.2
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 2.0e-90 337.4 523 38.4
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 2.6e-90 337.0 563 47.6
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 5.0e-89 332.8 466 53.0
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 5.0e-89 332.8 553 47.4
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 6.5e-89 332.4 453 54.1
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 3.2e-88 330.1 320 56.2
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 6.7e-86 322.4 504 48.6
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 2.2e-84 317.4 529 48.8
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 2.0e-82 310.8 494 48.4
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 2.6e-82 310.5 542 47.2
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 2.2e-81 307.4 336 63.7
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 2.2e-81 307.4 336 64.3
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 2.5e-80 303.9 429 53.8
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 3.2e-80 303.5 544 43.8
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 7.9e-79 298.9 309 68.0
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 2.3e-78 297.4 563 45.5
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 2.5e-77 293.9 501 46.1
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 3.7e-76 290.0 563 44.9
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 6.3e-76 289.3 444 40.8
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 2.3e-70 270.8 300 47.7
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.5e-64 250.8 330 44.8
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 1.2e-58 231.9 272 47.1
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 2.0e-50 204.5 269 59.9
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 5.9e-50 203.0 270 45.2
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 5.9e-50 203.0 269 59.1
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 5.0e-49 199.9 430 34.7
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 1.8e-46 191.4 239 63.6
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 9.8e-37 159.1 182 50.0
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 4.1e-35 153.7 270 57.0
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.9e-33 147.5 172 51.2
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 2.8e-31 141.0 132 56.8
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 6.2e-31 139.8 438 36.5
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 3.1e-30 137.5 176 46.0
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.2e-29 135.6 100 69.0
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 2.7e-26 124.4 163 46.0
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 4.3e-24 117.1 386 36.8
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 9.5e-24 115.9 120 55.8
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 1.6e-23 115.2 488 23.8
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.6e-21 107.8 180 38.3
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 5.4e-19 100.1 149 43.6
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-19 100.1 68 63.2
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 2.1e-18 98.2 168 36.3
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 2.8e-15 87.8 195 35.4
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.8e-14 85.1 123 42.3
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 2.6e-13 81.3 68 55.9
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 9.9e-13 79.3 210 28.1
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 1.3e-12 79.0 100 42.0
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 5.4e-11 73.6 68 50.0
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 7.1e-11 73.2 166 32.5
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 4.6e-10 70.5 73 47.9
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 1.7e-09 68.6 296 25.3
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 1.5e-08 65.5 146 34.9
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 2.1e-07 61.6 72 43.1
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 2.8e-07 61.2 79 45.6
QL02p059287 Quercus lobata HOM05D006674 ORTHO05D007954 3.6e-07 60.8 49 57.1
CSS0023659 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 3.1e-06 57.8 42 64.3
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 4.0e-06 57.4 48 54.2


User provided reference genes

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