Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1780.8 864 100.0
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1779.2 864 99.9
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1777.3 864 99.7
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1720.3 866 97.1
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1713.7 866 96.8
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1686.0 864 94.4
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1610.1 864 90.2
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1587.8 868 87.7
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1505.3 863 84.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1500.3 863 83.5
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1496.1 862 83.6
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1437.2 862 79.2
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1436.8 861 81.1
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1297.0 864 71.8
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1281.2 867 70.5
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 863 70.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 867 70.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 864 70.4
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 863 70.3
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1266.9 873 69.6
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 864 70.0
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 864 69.8
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 864 69.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 864 68.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 864 68.3
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 867 68.9
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 868 68.2
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1237.6 877 67.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 869 67.7
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 862 68.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1232.6 690 85.5
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1232.6 868 67.7
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 866 67.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 865 67.9
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 872 67.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 866 67.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 864 68.2
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 866 67.2
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 865 67.5
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 869 67.2
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 864 68.2
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 863 68.6
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 862 67.6
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 865 67.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 870 67.5
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 869 67.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 865 66.9
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 865 68.2
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 864 67.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 865 67.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 860 67.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 876 66.9
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 866 67.6
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 871 66.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 872 66.1
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1203.7 862 66.1
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 858 66.3
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1199.1 870 66.4
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 862 67.3
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1197.6 865 66.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1197.2 869 67.3
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1196.8 865 66.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1196.0 869 66.2
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1195.6 864 66.9
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1194.5 865 66.5
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 864 66.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 865 66.4
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 887 65.1
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 861 66.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1187.6 857 65.6
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1187.2 878 64.5
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 872 65.8
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 864 66.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 863 66.0
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1179.9 864 66.3
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1179.5 862 65.8
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1177.2 874 64.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1176.0 882 64.3
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1172.1 867 65.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1172.1 868 64.7
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1167.5 870 64.5
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 866 64.8
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1164.4 862 65.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1162.9 874 63.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1159.4 859 64.7
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1156.4 868 64.4
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1151.0 866 63.0
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1127.1 863 64.1
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1117.8 867 62.4
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1100.1 829 64.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1081.2 841 63.6
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 3.9e-306 1054.7 749 68.5
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.9e-298 1028.1 646 74.0
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.9e-298 1028.1 861 57.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.1e-297 1026.5 862 60.2
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 4.8e-296 1021.1 691 69.5
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 2.9e-293 1011.9 859 57.6
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 8.5e-285 983.8 861 54.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.4e-279 965.7 858 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 3.5e-278 961.8 864 53.9
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 7.0e-271 937.6 869 52.9
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 3.9e-205 719.2 778 47.7
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.8e-157 558.5 388 68.0
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.1e-151 541.6 475 56.6
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.8e-137 492.3 460 55.0
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.3e-117 427.6 361 59.8
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.9e-83 314.3 312 55.1
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.7e-62 244.2 168 68.5
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.1e-61 241.1 204 57.4
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 3.3e-47 194.5 161 60.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.2e-39 169.5 198 47.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.3e-38 166.0 169 49.1
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.8e-32 145.6 103 64.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 9.8e-31 139.8 149 47.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.5e-26 123.2 85 68.2
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.0e-25 120.2 118 52.5
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 69 72.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 4.9e-22 110.9 86 64.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.2e-20 106.3 90 60.0
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.1e-18 99.8 86 55.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-15 89.0 107 46.7
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.9e-14 85.1 321 25.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.4e-13 82.8 319 25.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.2e-13 80.1 274 25.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-12 79.7 298 24.8
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.0e-11 76.6 311 25.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.0e-11 75.1 251 24.3
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.6e-11 73.6 304 25.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 7.3e-10 70.5 338 21.3
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.8e-09 68.6 335 23.3
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.8e-09 68.6 65 53.8
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 6.2e-09 67.4 333 23.4
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.0e-09 67.0 303 25.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.4e-08 66.2 308 22.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.3e-08 65.5 298 23.5
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.1e-08 65.1 329 20.1
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.1e-08 65.1 98 39.8
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 4.0e-08 64.7 288 24.3
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 8.9e-08 63.5 305 24.9
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.3e-06 59.7 296 25.0
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.7e-06 59.3 32 78.1
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.7e-06 58.2 81 38.3
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.7e-06 58.2 167 25.7
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.7e-06 58.2 220 24.5
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 8.3e-06 57.0 200 26.0


User provided reference genes

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