Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 6.8e-288 993.4 546 100.0
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 6.8e-288 993.4 546 100.0
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 2.9e-283 978.0 546 98.7
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 2.0e-268 928.7 548 94.5
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.1e-205 720.3 549 77.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 4.7e-196 688.3 548 73.5
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 7.2e-189 664.5 604 69.9
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 1.1e-125 454.5 584 54.8
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 2.5e-125 453.4 580 54.8
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 3.3e-125 453.0 566 55.7
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 4.8e-124 449.1 587 52.6
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 2.4e-123 446.8 527 54.5
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 7.1e-112 408.7 574 50.5
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 9.7e-77 292.0 563 41.0
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 6.1e-55 219.5 575 35.0
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 1.4e-51 208.4 591 34.5
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.4e-46 191.8 589 32.6
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 5.2e-46 189.9 565 32.2
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 6.8e-46 189.5 580 33.4
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 5.8e-45 186.4 585 34.2
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 5.8e-45 186.4 610 31.3
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 1.3e-44 185.3 586 34.1
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.3e-44 185.3 641 31.7
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 2.9e-44 184.1 517 33.5
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 3.7e-44 183.7 589 33.8
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.4e-43 181.8 583 31.9
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 1.9e-43 181.4 632 31.6
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 1.2e-42 178.7 575 30.6
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 3.5e-42 177.2 606 31.8
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 6.0e-42 176.4 589 31.2
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.0e-41 175.6 622 31.8
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.7e-41 174.9 640 31.1
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 3.9e-41 173.7 335 39.7
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 5.0e-41 173.3 611 31.9
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 5.0e-41 173.3 617 31.3
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.5e-40 171.8 586 32.9
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 3.3e-40 170.6 614 30.1
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 2.1e-39 167.9 632 30.9
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 2.8e-39 167.5 627 30.6
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.6e-39 167.2 601 31.3
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 3.6e-39 167.2 578 32.5
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 1.1e-38 165.6 572 30.6
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 1.1e-38 165.6 571 30.8
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 1.1e-38 165.6 617 30.0
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 3.1e-38 164.1 607 29.5
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 4.0e-38 163.7 573 30.7
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 4.0e-38 163.7 577 31.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 5.2e-38 163.3 669 29.7
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 6.8e-38 162.9 570 30.9
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 8.9e-38 162.5 561 31.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 2.6e-37 161.0 582 31.1
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 2.6e-37 161.0 590 31.9
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.4e-37 160.6 526 31.6
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 4.4e-37 160.2 632 29.6
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 5.8e-37 159.8 584 32.4
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.3e-36 158.7 526 31.4
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 4.9e-36 156.8 587 30.3
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 2.4e-35 154.5 600 29.5
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 6.0e-34 149.8 589 31.2
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 6.0e-34 149.8 361 33.5
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 7.8e-34 149.4 634 30.4
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.0e-33 149.1 229 42.4
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 3.9e-33 147.1 397 34.0
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 3.9e-33 147.1 468 30.3
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 3.9e-33 147.1 622 29.6
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 6.6e-33 146.4 271 36.9
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.5e-32 145.2 383 35.0
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 5.6e-32 143.3 358 34.1
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 9.5e-32 142.5 665 27.7
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 9.5e-32 142.5 423 31.9
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 9.5e-32 142.5 623 29.7
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 4.7e-31 140.2 225 41.8
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 4.7e-31 140.2 258 40.3
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 4.7e-31 140.2 400 32.0
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 6.2e-31 139.8 521 30.3
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 1.4e-30 138.7 627 28.7
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 2.0e-29 134.8 641 28.1
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.6e-29 134.4 523 29.3
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 4.4e-29 133.7 365 33.4
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 5.8e-29 133.3 570 28.2
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.8e-29 133.3 597 28.1
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 7.5e-29 132.9 594 29.0
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 1.3e-28 132.1 611 29.0
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.3e-28 132.1 617 28.4
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.9e-28 131.0 493 30.0
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.1e-27 129.0 585 27.7
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 3.2e-27 127.5 286 35.0
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 4.6e-26 123.6 673 26.0
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 7.8e-26 122.9 587 26.9
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 1.0e-25 122.5 497 28.8
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.0e-25 122.5 477 29.8
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 3.0e-25 120.9 567 28.0
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 6.6e-25 119.8 653 27.0
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.5e-24 118.6 403 31.0
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.9e-24 118.2 518 29.2
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 3.3e-24 117.5 474 30.2
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 7.3e-24 116.3 404 30.2
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.1e-22 112.5 482 29.5
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 1.5e-21 108.6 459 27.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.0e-21 108.2 634 26.7
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 2.6e-21 107.8 584 27.2
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 4.4e-21 107.1 311 31.8
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 2.2e-20 104.8 205 36.1
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 2.4e-19 101.3 328 31.1
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 4.2e-19 100.5 574 27.9
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 4.2e-19 100.5 253 34.0
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 2.1e-18 98.2 546 26.6
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 3.9e-17 94.0 269 29.7
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 8.7e-17 92.8 202 35.6
BcaB04g18327 Brassica carinata HOM05D000073 ORTHO05D000033 2.8e-15 87.8 59 74.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 8.1e-15 86.3 556 25.9
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.4e-14 85.5 194 35.6
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 9.0e-14 82.8 196 34.7
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.4e-13 80.9 366 29.2
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.6e-10 72.0 93 43.0
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 9.6e-08 62.8 77 46.8


User provided reference genes

Program Settings