Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 8.2e-35 149.8 75 100.0
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 2.0e-25 118.6 59 98.3
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 6.5e-24 113.6 91 71.4
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 2.5e-23 111.7 91 70.3
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 2.5e-23 111.7 91 70.3
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 2.5e-23 111.7 91 70.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 7.2e-23 110.2 81 72.8
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.6e-22 109.0 92 68.5
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.6e-22 109.0 91 69.2
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 2.1e-22 108.6 91 68.1
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 2.1e-22 108.6 81 71.6
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 2.1e-22 108.6 81 71.6
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 4.7e-22 107.5 91 67.0
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 4.7e-22 107.5 91 68.1
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.0e-21 106.3 91 65.9
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.4e-21 105.9 91 65.9
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 3.0e-21 104.8 54 94.4
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 3.9e-21 104.4 54 94.4
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 6.7e-21 103.6 86 67.4
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 8.8e-21 103.2 52 96.2
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 8.8e-21 103.2 52 96.2
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 3.3e-20 101.3 52 96.2
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 9.7e-20 99.8 52 92.3
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 8.2e-19 96.7 52 90.4
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.6e-17 92.4 79 67.1
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.0e-16 89.7 52 76.9
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.5e-15 85.9 51 76.5
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.5e-15 85.1 51 74.5
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 2.5e-15 85.1 51 74.5
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 1.6e-14 82.4 51 72.5
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.1e-14 82.0 51 68.6
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 3.6e-14 81.3 51 72.5
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 3.6e-14 81.3 51 70.6
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 3.6e-14 81.3 51 70.6
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 8.0e-14 80.1 51 72.5
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 8.0e-14 80.1 51 70.6
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.0e-13 79.7 52 67.3
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.0e-13 79.7 52 65.4
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 1.4e-13 79.3 61 60.7
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.4e-13 79.3 52 65.4
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.4e-13 79.3 51 70.6
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 1.8e-13 79.0 51 70.6
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.8e-13 79.0 52 65.4
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.8e-13 79.0 51 66.7
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.3e-13 78.6 52 63.5
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.3e-13 78.6 51 72.5
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 2.3e-13 78.6 51 68.6
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.0e-13 78.2 51 68.6
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 3.0e-13 78.2 51 62.7
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 4.0e-13 77.8 51 66.7
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 4.0e-13 77.8 52 63.5
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 4.0e-13 77.8 51 66.7
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.0e-13 77.8 51 68.6
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 5.2e-13 77.4 51 68.6
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 5.2e-13 77.4 51 66.7
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 5.2e-13 77.4 51 68.6
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 5.2e-13 77.4 53 67.9
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 5.2e-13 77.4 51 62.7
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 6.8e-13 77.0 58 55.2
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.8e-13 77.0 58 55.2
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.8e-13 77.0 58 55.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.8e-13 77.0 58 55.2
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.8e-13 77.0 58 55.2
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 6.8e-13 77.0 51 66.7
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 6.8e-13 77.0 51 66.7
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 6.8e-13 77.0 51 64.7
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 66.7
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 70.6
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 62.7
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 62.7
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 66.7
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 68.6
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 8.8e-13 76.6 51 64.7
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 1.2e-12 76.3 51 70.6
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.2e-12 76.3 51 62.7
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.5e-12 75.9 53 66.0
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.5e-12 75.9 52 61.5
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 2.0e-12 75.5 54 57.4
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 2.6e-12 75.1 51 62.7
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 2.6e-12 75.1 51 66.7
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 3.4e-12 74.7 51 68.6
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 4.4e-12 74.3 53 62.3
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 5.7e-12 73.9 52 63.5
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 5.7e-12 73.9 51 62.7
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 7.5e-12 73.6 51 62.7
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 7.5e-12 73.6 51 60.8
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 7.5e-12 73.6 53 64.2
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 9.7e-12 73.2 51 62.7
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 9.7e-12 73.2 51 62.7
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 9.7e-12 73.2 51 60.8
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.3e-11 72.8 53 58.5
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 1.7e-11 72.4 51 60.8
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.2e-11 72.0 51 62.7
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 2.8e-11 71.6 51 66.7
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.8e-11 71.6 51 64.7
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 2.8e-11 71.6 51 64.7
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 4.8e-11 70.9 50 56.0
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 4.8e-11 70.9 51 60.8
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.8e-10 68.9 51 58.8
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 2.4e-10 68.6 51 62.7
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.4e-10 68.6 51 60.8
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 5.3e-10 67.4 51 64.7
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 5.3e-10 67.4 51 64.7
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 1.2e-09 66.2 51 56.9
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 2.7e-09 65.1 51 58.8
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 2.7e-09 65.1 51 58.8
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 3.5e-09 64.7 51 54.9
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.0e-08 63.2 51 56.9
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 1.3e-08 62.8 51 56.9
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 1.3e-08 62.8 51 56.9
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.3e-08 62.8 51 54.9
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.3e-08 62.8 51 54.9
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.8e-08 61.2 54 53.7
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 4.2e-07 57.8 51 51.0
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.6e-06 55.8 58 37.9
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-06 55.8 46 52.2
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.7e-06 55.1 43 55.8
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 3.6e-06 54.7 38 57.9


User provided reference genes

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