Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 8.3e-163 577.0 300 100.0
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.7e-160 569.3 301 99.0
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 4.7e-158 561.2 301 98.3
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 6.2e-150 534.3 302 93.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.2e-148 530.0 307 92.8
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 2.2e-139 499.2 302 88.7
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 7.6e-108 394.4 309 72.8
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.8e-94 348.6 307 65.1
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.4e-77 293.9 302 61.3
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 7.0e-77 291.6 312 58.7
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 7.2e-74 281.6 314 57.6
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.9e-67 259.6 310 54.5
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 2.3e-56 223.4 348 45.4
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.7e-43 180.6 308 42.5
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 2.3e-43 180.3 305 42.3
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 5.6e-42 175.6 345 38.6
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.1e-41 173.7 305 43.3
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 1.4e-40 171.0 346 38.4
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 4.0e-40 169.5 358 37.2
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.6e-39 166.8 354 36.7
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.8e-39 165.6 328 38.7
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.4e-37 161.0 170 55.9
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 5.1e-35 152.5 315 37.5
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 2.4e-29 133.7 338 34.9
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.0e-24 116.3 316 36.1
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 9.9e-23 111.7 375 29.1
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.8e-22 109.8 250 35.6
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 7.8e-20 102.1 225 34.7
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.6e-18 95.9 228 36.8
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 8.1e-17 92.0 221 34.8
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.4e-16 91.3 365 26.0
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.8e-16 90.9 378 26.2
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.6e-15 87.0 300 30.0
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.1e-13 81.6 457 25.2
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.9e-13 80.9 308 26.0
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.4e-13 80.5 360 25.0
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 3.2e-13 80.1 441 25.2
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 3.2e-13 80.1 302 25.8
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 3.2e-13 80.1 97 46.4
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 9.3e-13 78.6 447 24.6
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 1.2e-12 78.2 372 25.3
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.7e-12 77.0 74 50.0
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 3.5e-12 76.6 75 52.0
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 3.5e-12 76.6 347 25.4
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 7.9e-12 75.5 97 47.4
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.0e-11 75.1 455 23.3
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.3e-11 74.7 97 45.4
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.3e-11 74.7 456 24.1
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.3e-11 73.9 75 50.7
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.7e-11 72.4 79 49.4
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.7e-11 72.4 96 46.9
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 8.7e-11 72.0 101 44.6
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 8.7e-11 72.0 165 36.4
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 1.1e-10 71.6 96 46.9
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.5e-10 71.2 128 38.3
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.5e-10 71.2 97 42.3
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.5e-10 71.2 96 41.7
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.5e-10 71.2 487 21.6
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 2.5e-10 70.5 89 41.6
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.3e-10 70.1 467 22.5
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 3.3e-10 70.1 371 24.0
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 3.3e-10 70.1 476 23.3
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.3e-10 69.7 78 42.3
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 4.3e-10 69.7 76 46.1
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 4.3e-10 69.7 98 42.9
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 5.6e-10 69.3 184 32.1
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 5.6e-10 69.3 74 48.6
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 5.6e-10 69.3 451 23.7
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 7.4e-10 68.9 98 43.9
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.3e-09 68.2 94 39.4
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.3e-09 68.2 93 41.9
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.1e-09 67.4 98 39.8
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.1e-09 67.4 82 43.9
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 3.6e-09 66.6 171 31.6
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 3.6e-09 66.6 126 39.7
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 3.6e-09 66.6 65 50.8
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 4.8e-09 66.2 225 29.3
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 4.8e-09 66.2 98 43.9
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 4.8e-09 66.2 76 46.1
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.8e-09 66.2 93 41.9
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 6.2e-09 65.9 89 42.7
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 8.1e-09 65.5 97 43.3
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 1.4e-08 64.7 64 56.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.4e-08 64.7 95 41.1
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.8e-08 64.3 82 40.2
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.4e-08 63.9 87 44.8
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.4e-08 63.9 82 40.2
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 2.4e-08 63.9 68 48.5
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 4.0e-08 63.2 95 43.2
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 5.3e-08 62.8 85 43.5
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 6.9e-08 62.4 181 33.1
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 9.0e-08 62.0 395 24.8
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 1.5e-07 61.2 125 36.0
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.0e-07 60.8 74 45.9
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.0e-07 60.8 79 43.0
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.0e-07 60.8 255 25.9
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.6e-07 60.5 212 27.8
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 4.5e-07 59.7 65 44.6
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 4.5e-07 59.7 169 30.2
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 5.8e-07 59.3 107 36.4
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 5.8e-07 59.3 81 40.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 5.8e-07 59.3 67 43.3
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 7.6e-07 58.9 76 43.4
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 7.6e-07 58.9 170 28.8
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.3e-06 58.2 65 43.1
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.3e-06 58.2 72 43.1
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.7e-06 57.8 163 31.3
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 2.2e-06 57.4 174 30.5
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 3.8e-06 56.6 75 37.3
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 3.8e-06 56.6 65 44.6
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 4.9e-06 56.2 130 32.3
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 6.4e-06 55.8 443 21.7
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 6.4e-06 55.8 89 37.1


User provided reference genes

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