Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 2.7e-49 198.4 100 100.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 7.8e-49 196.8 100 99.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.3e-48 195.3 100 98.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.3e-48 195.3 100 98.0
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 6.6e-48 193.7 100 98.0
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.3e-40 168.7 108 81.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.8e-38 161.8 101 81.2
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 4.7e-38 161.0 88 92.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 9.9e-36 153.3 110 73.6
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.4e-34 148.7 100 77.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.2e-33 146.4 93 77.4
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 4.6e-33 144.4 103 72.8
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 9.0e-29 130.2 100 67.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.4e-28 128.3 101 70.3
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 5.8e-28 127.5 100 68.0
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 5.8e-28 127.5 100 66.0
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 5.8e-28 127.5 100 66.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.3e-27 126.3 100 65.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 3.8e-27 124.8 100 65.0
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 3.8e-27 124.8 100 65.0
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.4e-27 124.0 101 65.3
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-26 123.2 100 64.0
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.6e-25 119.4 100 64.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 6.0e-25 117.5 101 65.3
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.5e-23 112.1 100 61.0
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 6.2e-22 107.5 109 50.5
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.8e-21 105.9 110 50.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 4.0e-21 104.8 102 61.8
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 5.3e-21 104.4 106 50.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 5.3e-21 104.4 105 53.3
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.9e-21 104.0 108 50.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 9.0e-21 103.6 95 54.7
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.2e-20 103.2 112 50.0
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.6e-20 102.1 106 48.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 3.4e-20 101.7 102 49.0
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 4.5e-20 101.3 105 49.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.5e-20 101.3 112 48.2
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.5e-20 101.3 112 48.2
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 7.6e-20 100.5 102 52.0
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.3e-19 99.8 122 48.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.7e-19 99.4 108 47.2
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.2e-19 99.0 111 46.8
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 6.4e-19 97.4 108 47.2
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.4e-18 96.3 108 45.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.9e-18 95.9 104 47.1
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.2e-18 95.1 100 47.0
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.2e-18 95.1 104 47.1
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.2e-18 94.7 104 46.2
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 5.4e-18 94.4 110 43.6
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.6e-17 92.8 100 45.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.1e-17 92.4 108 49.1
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.5e-17 91.7 109 46.8
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.5e-17 91.7 109 46.8
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.5e-17 91.7 109 46.8
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 3.5e-17 91.7 107 44.9
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.6e-17 91.3 104 46.2
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 6.0e-17 90.9 109 44.0
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 6.0e-17 90.9 104 46.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 7.9e-17 90.5 108 45.4
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.3e-16 89.7 113 43.4
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.8e-16 89.4 105 46.7
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.3e-16 89.0 106 47.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.3e-16 89.0 111 43.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.0e-16 88.6 110 46.4
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.0e-16 88.6 108 45.4
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.1e-16 87.8 112 42.0
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 5.1e-16 87.8 108 46.3
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 6.7e-16 87.4 109 48.6
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-15 86.7 111 46.8
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.1e-15 86.7 110 44.5
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 2.5e-15 85.5 123 43.1
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.3e-15 85.1 109 45.9
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 5.6e-15 84.3 101 41.6
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 5.6e-15 84.3 124 42.7
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.4e-15 84.0 108 44.4
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.4e-15 84.0 108 44.4
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.4e-15 84.0 115 44.3
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 9.6e-15 83.6 105 41.0
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.6e-15 83.6 102 43.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.6e-15 83.6 102 43.1
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.6e-15 83.6 98 43.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 9.6e-15 83.6 107 44.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.6e-15 83.6 108 40.7
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.3e-14 83.2 123 41.5
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-14 83.2 108 45.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-14 83.2 108 45.4
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.1e-14 82.4 110 40.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 2.8e-14 82.0 109 43.1
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.8e-14 82.0 114 48.2
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.8e-14 82.0 89 47.2
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 3.7e-14 81.6 109 42.2
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.7e-14 81.6 88 46.6
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.8e-14 81.3 112 42.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.8e-14 81.3 108 46.3
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 8.1e-14 80.5 108 40.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 8.1e-14 80.5 112 37.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.4e-13 79.0 96 45.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 2.4e-13 79.0 90 46.7
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.4e-13 79.0 110 40.0
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 2.4e-13 79.0 109 45.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 4.0e-13 78.2 109 44.0
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 5.3e-13 77.8 105 41.9
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 6.9e-13 77.4 97 40.2
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.9e-13 77.4 97 41.2
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.0e-13 77.0 116 39.7
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 9.0e-13 77.0 109 40.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 9.0e-13 77.0 106 46.2
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 9.0e-13 77.0 103 40.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-12 76.6 116 39.7
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 2.6e-12 75.5 99 40.4
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.6e-12 75.5 104 41.3
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.4e-12 75.1 104 40.4
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 4.5e-12 74.7 95 42.1
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.6e-12 73.9 105 40.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.3e-11 73.2 96 43.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-11 72.8 110 39.1
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 2.9e-11 72.0 116 37.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 3.8e-11 71.6 51 56.9
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.8e-11 71.6 86 40.7
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.8e-11 71.6 90 40.0
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.9e-11 71.2 111 39.6
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.1e-10 70.1 53 60.4
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.4e-10 69.7 111 38.7
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.5e-10 68.9 101 41.6
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.2e-10 68.2 101 37.6
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 5.5e-10 67.8 108 37.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 7.1e-10 67.4 98 38.8
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 7.1e-10 67.4 114 37.7
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 9.3e-10 67.0 114 36.8
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 7.9e-09 63.9 112 38.4
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 7.9e-09 63.9 101 41.6
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.0e-08 63.5 104 36.5
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.9e-08 61.6 110 36.4
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.9e-08 61.6 110 36.4
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 6.7e-08 60.8 38 57.9
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-07 60.1 98 37.8
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.5e-07 59.7 74 37.8
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.3e-07 58.2 102 33.3
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 5.7e-07 57.8 105 41.0
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.6e-06 56.2 105 30.5
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.2e-06 53.9 85 37.6


User provided reference genes

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