Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 0.0e+00 1423.3 730 100.0
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 0.0e+00 1219.5 780 85.1
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 0.0e+00 1193.7 779 83.6
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 0.0e+00 1162.9 782 81.6
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 0.0e+00 1082.4 562 99.8
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 2.8e-305 1051.6 784 74.2
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 2.8e-297 1025.0 782 73.1
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 2.4e-296 1021.9 783 72.5
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 2.2e-294 1015.4 550 96.2
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 4.6e-284 981.1 782 69.7
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 1.2e-276 956.4 784 68.2
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 3.1e-272 941.8 785 68.2
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 1.8e-264 916.0 785 66.5
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 2.4e-240 835.9 780 62.2
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 5.6e-229 798.1 776 60.8
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 1.7e-225 786.6 728 64.1
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.8e-219 766.5 803 56.2
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.2e-186 657.5 817 50.4
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 2.2e-172 610.1 852 45.9
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.4e-171 606.7 849 45.8
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 3.4e-170 602.8 846 46.8
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 5.9e-170 602.1 847 45.3
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.7e-170 601.7 854 46.3
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 1.0e-169 601.3 851 45.4
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.1e-168 597.8 864 44.7
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 2.5e-168 596.7 850 45.4
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.2e-168 596.3 852 46.5
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.9e-166 589.3 852 46.2
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 1.5e-165 587.4 828 44.8
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 5.7e-165 585.5 838 44.9
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.4e-163 580.9 852 44.2
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 4.1e-163 579.3 839 44.5
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 9.1e-163 578.2 844 43.4
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.5e-162 577.4 850 42.8
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 2.0e-162 577.0 829 44.5
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 2.6e-162 576.6 825 44.5
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 5.9e-162 575.5 822 45.7
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 1.3e-161 574.3 853 43.7
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 1.7e-161 573.9 852 42.7
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.1e-160 571.2 831 43.2
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 7.2e-160 568.5 832 45.0
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.6e-159 567.4 829 42.8
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 6.1e-159 565.5 858 43.4
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 1.0e-158 564.7 812 43.7
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 1.4e-158 564.3 852 42.7
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.4e-158 564.3 847 42.5
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 1.4e-158 564.3 852 42.3
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 2.3e-158 563.5 851 42.5
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 5.2e-158 562.4 841 42.1
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 1.5e-157 560.8 850 43.5
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 5.7e-157 558.9 834 43.6
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 7.4e-157 558.5 850 44.1
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 7.4e-157 558.5 830 43.6
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 1.7e-156 557.4 849 42.4
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 2.8e-156 556.6 849 43.7
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 8.2e-156 555.1 831 43.8
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.6e-154 550.8 834 42.8
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 3.5e-154 549.7 885 41.0
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 3.5e-154 549.7 834 42.8
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.5e-154 549.3 838 42.5
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.9e-154 548.9 833 42.6
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 5.9e-154 548.9 833 43.6
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 2.9e-153 546.6 301 96.3
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 5.0e-153 545.8 833 43.0
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 5.0e-153 545.8 833 43.0
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 8.5e-153 545.0 856 42.2
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 1.5e-152 544.3 843 42.7
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.8e-150 537.3 814 40.5
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 2.3e-150 537.0 845 43.8
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 8.8e-150 535.0 852 42.8
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 8.8e-150 535.0 831 40.8
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 9.7e-149 531.6 976 38.2
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 2.2e-148 530.4 716 46.2
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.2e-148 530.4 829 42.6
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 2.9e-145 520.0 823 42.9
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 1.6e-143 514.2 836 41.6
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 1.4e-142 511.1 816 41.8
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 2.6e-141 506.9 654 49.8
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 1.1e-139 501.5 794 41.3
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 2.4e-139 500.4 817 41.5
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 2.4e-139 500.4 954 37.9
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 4.1e-139 499.6 878 40.5
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 1.3e-137 494.6 822 39.7
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 6.6e-137 492.3 857 40.3
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 2.8e-135 486.9 862 39.9
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 6.1e-135 485.7 822 40.0
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.0e-134 485.0 859 39.8
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 1.0e-134 485.0 850 39.4
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 4.0e-134 483.0 814 39.7
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 5.2e-134 482.6 784 43.1
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 1.5e-133 481.1 849 39.2
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 3.4e-133 479.9 838 39.0
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 2.2e-132 477.2 827 40.3
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 2.8e-132 476.9 823 38.9
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 8.3e-132 475.3 814 39.4
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 5.4e-131 472.6 837 38.6
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 3.5e-130 469.9 843 38.9
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 6.6e-129 465.7 254 95.7
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.1e-128 464.9 825 39.8
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 2.5e-128 463.8 984 36.2
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 5.6e-128 462.6 827 39.3
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 4.7e-127 459.5 826 38.6
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.0e-126 458.4 696 42.7
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 2.3e-126 457.2 650 46.0
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 2.0e-125 454.1 848 38.0
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 3.4e-125 453.4 837 39.2
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 9.8e-125 451.8 889 36.7
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 1.4e-123 448.0 864 38.7
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.2e-122 444.9 803 38.7
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 3.5e-122 443.4 866 38.0
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 1.0e-121 441.8 837 37.5
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 5.0e-121 439.5 837 38.2
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 6.6e-121 439.1 814 37.1
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 3.3e-120 436.8 855 38.4
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 1.4e-118 431.4 782 37.1
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.0e-117 427.6 833 37.8
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 5.8e-117 426.0 847 38.0
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 2.2e-116 424.1 254 87.8
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 8.3e-116 422.2 808 36.8
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 4.1e-115 419.9 835 38.3
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 2.7e-114 417.2 789 37.9
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.5e-114 416.8 680 41.6
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.1e-112 411.8 887 38.0
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.1e-112 411.8 791 37.5
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 4.4e-109 399.8 849 35.7
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 5.8e-109 399.4 874 35.0
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 9.9e-109 398.7 818 37.0
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 9.9e-109 398.7 817 36.4
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 3.2e-107 393.7 677 40.6
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.5e-104 384.0 575 42.3
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 9.5e-104 382.1 852 35.0
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.2e-103 381.7 641 41.0
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 6.2e-103 379.4 643 40.7
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.7e-98 364.0 584 40.9
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 4.6e-98 363.2 191 97.4
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 3.6e-95 353.6 607 39.4
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 6.9e-94 349.4 803 33.4
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.4e-91 340.9 806 31.9
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 7.8e-90 335.9 811 31.9
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 4.8e-87 326.6 633 36.7
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.1e-86 323.9 637 37.2
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 5.8e-85 319.7 642 36.9
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 1.7e-84 318.2 630 36.8
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 8.4e-84 315.8 481 40.7
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 4.2e-83 313.5 544 37.5
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.6e-82 311.6 616 35.9
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.6e-79 301.6 660 35.9
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 2.8e-79 300.8 614 37.3
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.2e-69 268.9 288 51.7
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 1.3e-63 248.8 663 33.5
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.8e-54 218.4 599 33.6
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.6e-50 205.3 447 36.7
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 2.4e-46 191.4 448 32.6
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-38 163.7 237 38.8
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 1.7e-36 158.7 342 36.5
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.2e-35 154.5 120 58.3
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 4.4e-32 144.1 333 34.5
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 1.3e-31 142.5 311 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.2e-26 125.9 187 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 6.1e-26 123.6 270 33.0
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 1.7e-23 115.5 150 50.7
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.7e-23 115.5 129 46.5
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 2.4e-22 111.7 166 45.2
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.0e-16 92.0 109 47.7
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 4.9e-15 87.4 70 57.1
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 9.2e-14 83.2 105 51.4
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-13 82.8 85 50.6
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 1.6e-13 82.4 111 42.3
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.7e-13 81.6 73 54.8
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.7e-12 79.0 59 59.3
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.3e-12 78.6 112 43.8
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.3e-12 78.6 73 53.4
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 6.1e-10 70.5 123 35.0
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 8.0e-10 70.1 53 52.8
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 9.8e-08 63.2 98 37.8
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 4.1e-06 57.8 75 38.7
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 5.4e-06 57.4 137 38.7
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 5.4e-06 57.4 42 57.1
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 9.2e-06 56.6 121 37.2


User provided reference genes

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