Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09467 Brassica carinata HOM05D002386 ORTHO05D032120 5.3e-87 324.3 165 100.0
BcaC09g49616 Brassica carinata HOM05D002386 ORTHO05D039710 6.8e-58 227.6 166 76.5
C04p43120 Brassica napus HOM05D002386 ORTHO05D032120 2.3e-45 186.0 92 98.9
BolC4t25889H Brassica oleracea HOM05D002386 ORTHO05D032120 2.3e-45 186.0 92 98.9
C01p34480 Brassica napus HOM05D002386 ORTHO05D039710 1.5e-41 173.3 96 89.6
A02p31530 Brassica napus HOM05D002386 ORTHO05D098323 6.4e-40 167.9 146 67.8
BcaB07g32964 Brassica carinata HOM05D002386 ORTHO05D092445 3.2e-39 165.6 161 62.7
BcaB07g32264 Brassica carinata HOM05D002386 ORTHO05D095377 6.4e-32 141.4 150 60.0
A01p14640 Brassica napus HOM05D002386 ORTHO05D006475 4.6e-30 135.2 190 52.1
BraA01t01404Z Brassica rapa HOM05D002386 ORTHO05D006475 1.0e-29 134.0 190 51.6
Sp7g21340 Schrenkiella parvula HOM05D002386 ORTHO05D006475 3.0e-29 132.5 190 50.5
C01p18140 Brassica napus HOM05D002386 ORTHO05D006475 5.1e-29 131.7 190 51.1
BolC1t01741H Brassica oleracea HOM05D002386 ORTHO05D006475 5.1e-29 131.7 190 51.1
Thhalv10024327m.g Eutrema salsugineum HOM05D002386 ORTHO05D006475 2.5e-28 129.4 190 50.0
BcaNung01440 Brassica carinata HOM05D002386 ORTHO05D006475 5.6e-28 128.3 188 48.9
A03p54290 Brassica napus HOM05D002386 ORTHO05D006475 5.6e-28 128.3 188 48.9
BraA03t14491Z Brassica rapa HOM05D002386 ORTHO05D006475 5.6e-28 128.3 188 48.9
AL7G30020 Arabidopsis lyrata HOM05D002386 ORTHO05D006475 7.3e-28 127.9 190 48.9
AT4G23440 Arabidopsis thaliana HOM05D002386 ORTHO05D006475 7.3e-28 127.9 190 48.9
BolC7t45768H Brassica oleracea HOM05D002386 ORTHO05D006475 7.3e-28 127.9 188 48.9
Carub.0007s1763 Capsella rubella HOM05D002386 ORTHO05D006475 7.3e-28 127.9 190 48.9
C07p52670 Brassica napus HOM05D002386 ORTHO05D006475 1.6e-27 126.7 188 48.4
Aa31LG6G6630 Aethionema arabicum HOM05D002386 ORTHO05D006475 1.8e-26 123.2 190 47.9
CARHR230770 Cardamine hirsuta HOM05D002386 ORTHO05D006475 2.4e-26 122.9 190 47.9
Ciclev10018685m.g Citrus clementina HOM05D002386 ORTHO05D006475 3.4e-17 92.4 188 38.3
Cfa012209 Carpinus fangiana HOM05D002386 ORTHO05D006475 1.3e-16 90.5 188 38.8
THA.LOC104814630 Tarenaya hassleriana HOM05D002386 ORTHO05D006475 3.8e-16 89.0 189 39.2
Thecc.10G083600 Theobroma cacao HOM05D002386 ORTHO05D006475 6.4e-16 88.2 188 38.3
Haze_08802 Corylus avellana HOM05D002386 ORTHO05D006475 1.1e-15 87.4 188 37.8
Duzib106G2040 Durio zibethinus HOM05D002386 ORTHO05D006475 1.1e-15 87.4 188 38.8
Gohir.A05G292900 Gossypium hirsutum HOM05D002386 ORTHO05D006475 3.2e-15 85.9 188 36.2
MSTRG.25622 Avicennia marina HOM05D002386 ORTHO05D006475 5.5e-15 85.1 94 50.0
Potri.003G129600 Populus trichocarpa HOM05D002386 ORTHO05D006475 5.5e-15 85.1 188 37.2
Atru.BG.189.p Acer truncatum HOM05D002386 ORTHO05D006475 9.3e-15 84.3 188 37.8
COL.COLO4_34212 Corchorus olitorius HOM05D002386 ORTHO05D006475 2.1e-14 83.2 183 36.6
CAN.G532.1 Capsicum annuum HOM05D002386 ORTHO05D006475 2.7e-14 82.8 189 35.4
Sabra03G0092100 Salix brachista HOM05D002386 ORTHO05D006475 2.7e-14 82.8 188 36.7
Duzib114G0014 Durio zibethinus HOM05D002386 ORTHO05D006475 3.5e-14 82.4 188 36.2
Gorai.009G310300 Gossypium raimondii HOM05D002386 ORTHO05D006475 3.5e-14 82.4 188 36.2
Medtr8g098575 Medicago truncatula HOM05D002386 ORTHO05D006475 4.6e-14 82.0 188 35.6
Sopen08g029570 Solanum pennellii HOM05D002386 ORTHO05D006475 6.0e-14 81.6 92 48.9
PGSC0003DMG400012335 Solanum tuberosum HOM05D002386 ORTHO05D006475 7.9e-14 81.3 92 48.9
Ah.07g196380 Amaranthus hybridus HOM05D002386 ORTHO05D006475 1.0e-13 80.9 111 46.8
arahy.Tifrunner.gnm1.ann1.E5IT1X Arachis hypogaea HOM05D002386 ORTHO05D006475 1.0e-13 80.9 188 37.2
CSS0029765 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 1.0e-13 80.9 188 37.8
CSS0033474 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 1.0e-13 80.9 188 37.8
Phvul.002G158300 Phaseolus vulgaris HOM05D002386 ORTHO05D006475 1.0e-13 80.9 188 36.2
Lalb_Chr16g0390111 Lupinus albus HOM05D002386 ORTHO05D006475 1.3e-13 80.5 210 34.3
Rhsim02G0233200 Rhododendron simsii HOM05D002386 ORTHO05D006475 1.8e-13 80.1 188 36.7
Solyc08g081260.1 Solanum lycopersicum HOM05D002386 ORTHO05D006475 1.8e-13 80.1 92 47.8
TWI60G0569 Tripterygium wilfordii HOM05D002386 ORTHO05D006475 1.8e-13 80.1 188 35.1
MSTRG.13848 Avicennia marina HOM05D002386 ORTHO05D006475 2.3e-13 79.7 107 44.9
EL10Ac5g12796 Beta vulgaris HOM05D002386 ORTHO05D006475 2.3e-13 79.7 85 55.3
AUR62010703 Chenopodium quinoa HOM05D002386 ORTHO05D006475 2.3e-13 79.7 188 36.2
AUR62017182 Chenopodium quinoa HOM05D002386 ORTHO05D006475 2.3e-13 79.7 188 36.2
Gohir.A05G411100 Gossypium hirsutum HOM05D002386 ORTHO05D006475 2.3e-13 79.7 188 35.1
Rhsim07G0088900 Rhododendron simsii HOM05D002386 ORTHO05D006475 2.3e-13 79.7 188 35.6
Duzib128G1887 Durio zibethinus HOM05D002386 ORTHO05D006475 3.0e-13 79.3 188 34.6
Peaxi162Scf00074g02011 Petunia axillaris HOM05D002386 ORTHO05D006475 3.0e-13 79.3 188 35.1
RhsimUnG0160100 Rhododendron simsii HOM05D002386 ORTHO05D006475 3.0e-13 79.3 188 36.2
CiPaw.11G133200 Carya illinoinensis HOM05D002386 ORTHO05D006475 3.9e-13 79.0 188 36.2
Gohir.D10G210700 Gossypium hirsutum HOM05D002386 ORTHO05D006475 3.9e-13 79.0 188 35.6
Gorai.011G236200 Gossypium raimondii HOM05D002386 ORTHO05D006475 3.9e-13 79.0 188 35.6
Nitab4.5_0001522g0130 Nicotiana tabacum HOM05D002386 ORTHO05D006475 3.9e-13 79.0 188 35.6
Nitab4.5_0002975g0010 Nicotiana tabacum HOM05D002386 ORTHO05D006475 3.9e-13 79.0 188 35.6
Oeu042333.1 Olea europaea HOM05D002386 ORTHO05D006475 3.9e-13 79.0 188 34.0
Lj4g0009407 Lotus japonicus HOM05D002386 ORTHO05D006475 5.1e-13 78.6 189 36.0
Gohir.D04G004900 Gossypium hirsutum HOM05D002386 ORTHO05D006475 6.7e-13 78.2 188 34.6
Gohir.D05G293700 Gossypium hirsutum HOM05D002386 ORTHO05D006475 6.7e-13 78.2 188 35.1
Gorai.012G006200 Gossypium raimondii HOM05D002386 ORTHO05D006475 6.7e-13 78.2 188 34.6
Lalb_Chr05g0224641 Lupinus albus HOM05D002386 ORTHO05D006475 6.7e-13 78.2 210 32.4
Hund14828 Selenicereus undatus HOM05D002386 ORTHO05D006475 6.7e-13 78.2 188 36.7
Actinidia01993 Actinidia chinensis HOM05D002386 ORTHO05D006475 8.7e-13 77.8 188 35.6
Ca_17514_v3 Cicer arietinum L. HOM05D002386 ORTHO05D006475 8.7e-13 77.8 190 35.3
Gohir.A10G202500 Gossypium hirsutum HOM05D002386 ORTHO05D006475 8.7e-13 77.8 188 35.6
Phvul.002G291100 Phaseolus vulgaris HOM05D002386 ORTHO05D006475 1.5e-12 77.0 188 35.6
VMungo0251G0364 Vigna mungo HOM05D002386 ORTHO05D006475 1.9e-12 76.6 188 35.6
Eucgr.D01831 Eucalyptus grandis HOM05D002386 ORTHO05D006475 2.5e-12 76.3 188 36.2
ECA233G1635 Erigeron canadensis HOM05D002386 ORTHO05D006475 3.3e-12 75.9 188 34.6
Manes.02G021100 Manihot esculenta HOM05D002386 ORTHO05D006475 3.3e-12 75.9 85 55.3
RcHm_v2.0_Chr7g0197191 Rosa chinensis HOM05D002386 ORTHO05D006475 3.3e-12 75.9 85 55.3
CANSAT21G0111 Cannabis sativa HOM05D002386 ORTHO05D006475 4.3e-12 75.5 85 54.1
Migut.E01078 Erythranthe guttata HOM05D002386 ORTHO05D006475 4.3e-12 75.5 188 34.6
Glyma.05G209300 Glycine max HOM05D002386 ORTHO05D006475 4.3e-12 75.5 188 35.1
GSVIVG01029435001 Vitis vinifera HOM05D002386 ORTHO05D006475 5.6e-12 75.1 188 35.1
LjContig00312_ERROPOS870357g0000119 Lotus japonicus HOM05D002386 ORTHO05D006475 7.4e-12 74.7 188 36.2
FvH4_5g02740 Fragaria vesca HOM05D002386 ORTHO05D006475 9.6e-12 74.3 83 56.6
FAN18G4077 Fragaria x ananassa HOM05D002386 ORTHO05D006475 9.6e-12 74.3 83 56.6
Glyma.11G022700 Glycine max HOM05D002386 ORTHO05D006475 9.6e-12 74.3 188 33.5
Glyma.08G016000 Glycine max HOM05D002386 ORTHO05D006475 1.3e-11 73.9 188 34.6
MD06G1086700 Malus domestica HOM05D002386 ORTHO05D006475 1.3e-11 73.9 188 35.1
Oeu011039.5 Olea europaea HOM05D002386 ORTHO05D006475 1.3e-11 73.9 188 33.5
VMungo1215G1453 Vigna mungo HOM05D002386 ORTHO05D006475 1.3e-11 73.9 188 34.0
FAN08G0637 Fragaria x ananassa HOM05D002386 ORTHO05D006475 1.6e-11 73.6 83 56.6
Psat7g031760 Pisum sativum HOM05D002386 ORTHO05D006475 1.6e-11 73.6 188 34.6
CSS0046375 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 2.1e-11 73.2 188 35.6
Cc08_g14930 Coffea canephora HOM05D002386 ORTHO05D006475 2.1e-11 73.2 85 50.6
Glyma.01G220900 Glycine max HOM05D002386 ORTHO05D006475 2.8e-11 72.8 188 33.5
MD14G1107900 Malus domestica HOM05D002386 ORTHO05D006475 2.8e-11 72.8 85 51.8
Prupe.5G103200 Prunus persica HOM05D002386 ORTHO05D006475 2.8e-11 72.8 71 56.3
Cpa.g.sc214.13 Carica papaya HOM05D002386 ORTHO05D006475 3.7e-11 72.4 188 34.0
QL12p032531 Quercus lobata HOM05D002386 ORTHO05D006475 3.7e-11 72.4 85 51.8
Lj2A183T64 Lonicera japonica HOM05D002386 ORTHO05D006475 4.8e-11 72.0 188 30.9
MELO3C005690.2 Cucumis melo HOM05D002386 ORTHO05D006475 6.2e-11 71.6 188 34.0
HanXRQChr10g0309131 Helianthus annuus HOM05D002386 ORTHO05D006475 6.2e-11 71.6 85 50.6
CsaV3_5G002670 Cucumis sativus L. HOM05D002386 ORTHO05D006475 8.1e-11 71.2 188 33.5
FAN04G1337 Fragaria x ananassa HOM05D002386 ORTHO05D006475 8.1e-11 71.2 83 55.4
Nn1g01575 Nelumbo nucifera HOM05D002386 ORTHO05D006475 8.1e-11 71.2 95 46.3
Ca_24548_v3 Cicer arietinum L. HOM05D002386 ORTHO05D006475 1.1e-10 70.9 188 33.5
HanXRQChr13g0394521 Helianthus annuus HOM05D002386 ORTHO05D006475 1.1e-10 70.9 85 49.4
Lalb_Chr09g0320951 Lupinus albus HOM05D002386 ORTHO05D006475 1.1e-10 70.9 85 49.4
SalBow1G1233 Salvia bowleyana HOM05D002386 ORTHO05D006475 1.1e-10 70.9 92 46.7
PGR031G0858 Punica granatum HOM05D002386 ORTHO05D006475 1.4e-10 70.5 85 47.1
ClCG01G002570 Citrullus lanatus HOM05D002386 ORTHO05D006475 3.1e-10 69.3 188 33.5
TAR374G1581 Trochodendron aralioides HOM05D002386 ORTHO05D006475 3.1e-10 69.3 189 32.8
Lsat_1_v5_gn_6_5340 Lactuca sativa HOM05D002386 ORTHO05D006475 4.0e-10 68.9 85 48.2
TAR375G0570 Trochodendron aralioides HOM05D002386 ORTHO05D006475 4.0e-10 68.9 91 49.5
arahy.Tifrunner.gnm1.ann1.3CTT0B Arachis hypogaea HOM05D002386 ORTHO05D006475 5.3e-10 68.6 123 35.8
arahy.Tifrunner.gnm1.ann1.6I5Y8L Arachis hypogaea HOM05D002386 ORTHO05D006475 9.0e-10 67.8 210 30.0
TPR.G12884 Trifolium pratense HOM05D002386 ORTHO05D006475 9.0e-10 67.8 188 32.4
DCAR_008370 Daucus carota HOM05D002386 ORTHO05D006475 1.2e-09 67.4 85 43.5
Dinv37624 Davidia involucrata HOM05D002386 ORTHO05D006475 1.2e-09 67.4 188 34.0
TAR629G3360 Trochodendron aralioides HOM05D002386 ORTHO05D006475 1.2e-09 67.4 92 42.4
Sc22g0005550 Simmondsia chinensis HOM05D002386 ORTHO05D006475 5.8e-09 65.1 85 49.4
Sed0020631 Sechium edule HOM05D002386 ORTHO05D006475 2.2e-08 63.2 85 44.7
Os01g0760400 Oryza sativa ssp. japonica HOM05D002386 ORTHO05D006475 2.9e-08 62.8 83 48.2
unitig_88.g27618 Utricularia gibba HOM05D002386 ORTHO05D006475 4.9e-08 62.0 85 44.7
SGA_v2.0_scaffold48G18082 Striga asiatica HOM05D002386 ORTHO05D006475 8.4e-08 61.2 79 43.0
SHI07170 Sapria himalayana HOM05D002386 ORTHO05D006475 1.1e-07 60.8 97 46.4
Aqoxy7G00267 Aquilegia oxysepala HOM05D002386 ORTHO05D006475 3.2e-07 59.3 73 46.6
Migut.A00741 Erythranthe guttata HOM05D002386 ORTHO05D006475 1.2e-06 57.4 83 45.8
SEGI_33325 Sequoiadendron giganteum HOM05D002386 ORTHO05D006475 1.6e-06 57.0 83 42.2
ATR0680G256 Amborella trichopoda HOM05D002386 ORTHO05D006475 3.5e-06 55.8 85 40.0
PSO478G0747 Papaver somniferum HOM05D002386 ORTHO05D006475 4.6e-06 55.5 70 48.6
PSO782G1050 Papaver somniferum HOM05D002386 ORTHO05D006475 6.0e-06 55.1 70 47.1


User provided reference genes

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