Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 6.5e-95 350.9 202 100.0
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 3.6e-93 345.1 202 98.0
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 3.7e-90 335.1 199 96.5
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 2.2e-87 325.9 202 94.1
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 5.2e-84 314.7 199 93.0
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 9.5e-78 293.9 200 85.0
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 9.2e-65 250.8 204 72.5
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 2.9e-58 229.2 202 70.3
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 2.2e-42 176.4 209 60.3
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 5.4e-33 145.2 204 51.0
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 3.9e-31 139.0 203 51.2
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 6.6e-31 138.3 208 48.6
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 1.8e-28 130.2 201 48.8
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 9.9e-27 124.4 151 57.0
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.3e-26 124.0 157 49.7
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 2.9e-26 122.9 124 57.3
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 6.4e-26 121.7 170 47.1
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.1e-25 120.9 185 43.2
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 7.1e-25 118.2 172 45.9
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 9.3e-25 117.9 174 46.6
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 1.2e-24 117.5 144 53.5
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.2e-24 117.5 205 43.9
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 1.6e-24 117.1 124 58.9
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.6e-24 117.1 194 42.8
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 2.1e-24 116.7 152 50.0
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 2.1e-24 116.7 176 44.3
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 2.7e-24 116.3 194 46.4
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.7e-24 116.3 125 53.6
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 3.5e-24 115.9 144 52.8
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 4.6e-24 115.5 126 55.6
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 4.6e-24 115.5 122 57.4
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 6.0e-24 115.2 143 51.7
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 7.9e-24 114.8 128 55.5
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 1.0e-23 114.4 134 53.0
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.3e-23 114.0 127 52.0
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.3e-23 114.0 127 52.0
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 1.3e-23 114.0 144 49.3
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 1.8e-23 113.6 192 40.6
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.8e-23 113.6 142 52.8
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 3.0e-23 112.8 156 49.4
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 3.0e-23 112.8 155 50.3
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 3.9e-23 112.5 92 67.4
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.9e-23 112.5 153 50.3
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 3.9e-23 112.5 119 56.3
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 5.1e-23 112.1 95 67.4
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.1e-23 112.1 155 49.0
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 5.1e-23 112.1 141 48.9
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 6.7e-23 111.7 188 43.6
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 8.7e-23 111.3 191 42.9
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 1.1e-22 110.9 95 64.2
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 1.5e-22 110.5 153 51.0
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 1.5e-22 110.5 161 46.6
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 2.5e-22 109.8 104 63.5
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 3.3e-22 109.4 96 66.7
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.6e-22 108.6 154 46.8
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 5.6e-22 108.6 95 65.3
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 7.4e-22 108.2 83 69.9
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 7.4e-22 108.2 102 60.8
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 7.4e-22 108.2 119 54.6
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 9.6e-22 107.8 122 53.3
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 9.6e-22 107.8 175 45.1
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 1.3e-21 107.5 158 46.2
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 1.6e-21 107.1 109 59.6
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 1.6e-21 107.1 128 53.1
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 2.1e-21 106.7 97 64.9
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 2.8e-21 106.3 182 42.3
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 2.8e-21 106.3 82 68.3
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.7e-21 105.9 154 45.5
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 3.7e-21 105.9 119 53.8
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.7e-21 105.9 134 52.2
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 6.2e-21 105.1 192 41.7
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 6.2e-21 105.1 83 66.3
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 6.2e-21 105.1 160 48.1
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 1.1e-20 104.4 97 62.9
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 1.8e-20 103.6 146 47.3
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 1.8e-20 103.6 129 51.2
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.4e-20 103.2 150 47.3
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.1e-20 102.8 127 52.0
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 3.1e-20 102.8 89 62.9
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 4.0e-20 102.4 131 45.8
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 6.9e-20 101.7 130 51.5
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 6.9e-20 101.7 145 44.1
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 9.0e-20 101.3 165 43.0
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 9.0e-20 101.3 228 40.8
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.2e-19 100.9 76 69.7
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 1.2e-19 100.9 134 48.5
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 1.5e-19 100.5 206 38.3
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.5e-19 100.5 165 43.0
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 1.5e-19 100.5 204 40.2
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 2.0e-19 100.1 163 42.3
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 2.0e-19 100.1 163 41.1
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 2.6e-19 99.8 126 48.4
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 4.5e-19 99.0 114 50.9
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.8e-19 98.6 144 46.5
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 2.2e-18 96.7 195 44.6
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 2.9e-18 96.3 80 65.0
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 4.9e-18 95.5 200 40.5
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.5e-18 95.1 83 61.4
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 8.4e-18 94.7 182 40.7
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 8.4e-18 94.7 127 48.8
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 7.1e-17 91.7 129 51.9
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 1.8e-15 87.0 126 48.4
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 1.8e-15 87.0 76 65.8
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 2.3e-15 86.7 127 47.2
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 2.3e-15 86.7 168 38.7
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 5.1e-15 85.5 111 47.7
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 6.7e-15 85.1 127 45.7
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 1.5e-14 84.0 65 66.2
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 1.5e-14 84.0 90 53.3
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 5.7e-14 82.0 83 57.8
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 5.7e-14 82.0 64 65.6
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 9.6e-14 81.3 74 56.8
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 1.3e-13 80.9 100 50.0
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.3e-13 80.9 95 49.5
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 1.1e-12 77.8 159 37.1
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 1.2e-11 74.3 150 38.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 1.5e-11 73.9 127 43.3
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 3.4e-11 72.8 66 56.1
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.0e-10 71.2 117 40.2
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 2.9e-10 69.7 105 43.8
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 9.3e-09 64.7 65 55.4
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 9.3e-09 64.7 65 55.4
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-08 64.3 63 57.1
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-08 64.3 63 57.1
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 3.5e-08 62.8 81 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.8e-07 60.5 45 64.4
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 1.1e-06 57.8 110 37.3
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 1.9e-06 57.0 60 48.3


User provided reference genes

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