Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 8.6e-106 387.1 212 100.0
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 8.6e-106 387.1 212 100.0
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 1.4e-103 379.8 213 99.1
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 2.4e-92 342.4 213 91.1
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 3.5e-91 338.6 190 96.8
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 3.3e-81 305.4 213 83.1
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 8.1e-80 300.8 213 81.2
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 2.6e-78 295.8 212 78.8
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 9.9e-78 293.9 212 79.2
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.8e-72 275.8 213 76.5
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.8e-64 249.2 182 80.8
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 5.0e-61 238.4 213 69.0
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.4e-50 203.8 217 59.4
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.9e-50 202.2 218 58.7
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 2.0e-46 189.9 225 56.0
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 5.9e-46 188.3 226 55.8
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.4e-44 183.7 109 90.8
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 2.5e-44 183.0 225 55.1
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 2.5e-44 183.0 225 55.1
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 2.5e-44 183.0 225 55.1
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 2.3e-42 176.4 227 54.2
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.8e-40 169.5 214 52.3
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 6.3e-40 168.3 223 52.9
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 6.5e-37 158.3 217 52.5
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.5e-36 157.1 229 49.8
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 2.7e-35 152.9 227 48.0
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.7e-29 133.7 225 48.4
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 8.8e-26 121.3 222 42.8
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 4.4e-25 119.0 225 43.1
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 4.4e-25 119.0 205 43.4
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 9.8e-25 117.9 192 44.3
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.7e-24 117.1 227 43.6
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.7e-24 117.1 219 42.0
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 3.7e-24 115.9 222 42.3
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 8.3e-24 114.8 222 42.3
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.8e-23 113.6 176 43.8
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 2.4e-23 113.2 190 44.7
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.1e-23 112.5 212 42.9
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 5.4e-23 112.1 190 44.2
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 7.0e-23 111.7 223 42.6
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 9.1e-23 111.3 223 40.4
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 1.2e-22 110.9 257 38.1
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 1.2e-22 110.9 179 45.8
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.2e-22 110.9 229 41.5
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.2e-22 110.9 200 42.5
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 3.5e-22 109.4 247 38.5
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 4.5e-22 109.0 227 40.1
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 5.9e-22 108.6 220 37.7
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.3e-21 107.5 232 39.2
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.7e-21 107.1 214 40.7
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.2e-21 106.7 189 43.4
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 2.9e-21 106.3 198 41.9
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 3.8e-21 105.9 208 41.3
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 1.1e-20 104.4 186 44.6
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 1.9e-20 103.6 225 39.6
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.9e-20 103.6 220 39.1
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 1.9e-20 103.6 233 39.9
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.9e-20 103.6 166 43.4
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 3.2e-20 102.8 243 38.7
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 3.2e-20 102.8 208 43.8
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 4.2e-20 102.4 191 42.4
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 4.2e-20 102.4 230 39.1
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 5.5e-20 102.1 191 40.8
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 7.2e-20 101.7 219 36.1
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 2.7e-19 99.8 222 38.7
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 3.6e-19 99.4 156 43.6
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 6.1e-19 98.6 220 38.2
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-19 98.2 223 39.9
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-19 98.2 221 38.0
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-19 98.2 221 38.0
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 1.4e-18 97.4 221 37.6
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.8e-18 97.1 221 37.6
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.8e-18 97.1 191 40.3
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.3e-18 96.7 114 50.9
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 2.3e-18 96.7 103 53.4
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 4.0e-18 95.9 183 40.4
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 6.8e-18 95.1 215 40.9
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 6.8e-18 95.1 208 35.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 8.8e-18 94.7 231 39.8
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 2.0e-17 93.6 193 41.5
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 2.0e-17 93.6 189 39.7
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 2.6e-17 93.2 209 37.3
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.6e-17 93.2 222 38.3
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 7.5e-17 91.7 227 34.8
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 9.8e-17 91.3 210 37.6
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 9.8e-17 91.3 194 37.6
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 9.8e-17 91.3 215 37.7
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.3e-16 90.9 124 46.0
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.3e-16 90.9 234 37.2
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.3e-16 90.9 208 39.9
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 2.2e-16 90.1 209 40.7
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.2e-16 90.1 203 40.4
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.2e-16 90.1 187 40.1
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 2.8e-16 89.7 218 39.0
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 2.8e-16 89.7 222 36.5
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 2.8e-16 89.7 186 40.3
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.7e-16 89.4 208 39.9
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 4.9e-16 89.0 222 35.6
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 8.3e-16 88.2 213 39.0
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 8.3e-16 88.2 198 41.4
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 1.1e-15 87.8 187 37.4
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.1e-15 87.8 191 37.2
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.4e-15 87.4 203 38.4
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 2.4e-15 86.7 100 49.0
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 3.1e-15 86.3 111 49.5
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.1e-15 86.3 198 36.4
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 4.1e-15 85.9 188 39.9
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.4e-15 85.5 190 38.9
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.6e-14 84.0 204 35.3
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 1.6e-14 84.0 131 43.5
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.6e-14 84.0 110 46.4
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 2.7e-14 83.2 271 32.5
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 5.9e-14 82.0 200 35.5
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 1.0e-13 81.3 226 34.1
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 1.3e-13 80.9 193 38.9
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 2.9e-13 79.7 187 37.4
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 6.6e-13 78.6 203 36.0
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.5e-12 77.4 171 40.9
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 2.5e-12 76.6 220 33.6
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 4.3e-12 75.9 233 34.3
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.3e-12 75.9 184 34.8
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 1.2e-11 74.3 185 37.8
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 2.1e-11 73.6 111 44.1
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 1.8e-10 70.5 172 34.9
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 3.0e-10 69.7 224 33.0
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 6.8e-10 68.6 185 37.8
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 2.9e-08 63.2 211 32.2
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 8.3e-08 61.6 190 32.1


User provided reference genes

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