Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 8.1e-31 137.1 110 96.4
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 8.1e-31 137.1 110 100.0
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 8.1e-31 137.1 110 100.0
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 8.1e-31 137.1 110 100.0
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 2.0e-29 132.5 111 99.1
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 2.0e-29 132.5 111 99.1
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 2.1e-26 122.5 110 90.0
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 6.2e-23 110.9 110 88.2
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 6.8e-22 107.5 94 93.6
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 6.8e-22 107.5 110 86.4
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 1.2e-21 106.7 110 85.5
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 5.8e-21 104.4 110 86.4
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 1.7e-20 102.8 111 85.6
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 1.7e-20 102.8 102 88.2
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 1.7e-20 102.8 111 85.6
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 1.7e-20 102.8 111 85.6
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 1.4e-19 99.8 110 80.9
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 1.4e-19 99.8 110 83.6
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 7.8e-18 94.0 121 77.7
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.0e-17 93.6 108 51.9
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 3.9e-17 91.7 110 80.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.5e-16 89.7 110 48.2
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.8e-15 85.5 110 47.3
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 6.2e-15 84.3 110 46.4
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 1.4e-14 83.2 111 78.4
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 2.4e-14 82.4 110 46.4
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 2.4e-14 82.4 108 46.3
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 5.2e-14 81.3 108 45.4
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 6.9e-14 80.9 111 46.8
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.4e-13 78.6 107 43.0
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 3.4e-13 78.6 110 45.5
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 5.8e-13 77.8 107 43.0
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 7.6e-13 77.4 111 44.1
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.7e-12 76.3 108 43.5
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.2e-12 75.9 110 43.6
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 3.8e-12 75.1 109 44.0
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 2.4e-11 72.4 118 44.1
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 2.4e-11 72.4 107 41.1
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 3.2e-11 72.0 107 41.1
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 4.2e-11 71.6 107 40.2
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 4.2e-11 71.6 106 42.5
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 9.3e-11 70.5 107 61.7
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 9.3e-11 70.5 107 61.7
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 9.3e-11 70.5 107 61.7
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 9.3e-11 70.5 107 61.7
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 9.3e-11 70.5 107 40.2
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.2e-10 70.1 107 40.2
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 1.6e-10 69.7 94 48.9
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 1.6e-10 69.7 125 41.6
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 2.1e-10 69.3 107 38.3
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 7.8e-10 67.4 94 51.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.7e-09 66.2 94 50.0
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.7e-09 66.2 109 39.4
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 2.3e-09 65.9 107 52.3
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 2.3e-09 65.9 107 52.3
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 2.3e-09 65.9 107 53.3
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 3.9e-09 65.1 108 36.1
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 5.1e-09 64.7 106 47.2
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 6.6e-09 64.3 106 51.9
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 8.7e-09 63.9 106 47.2
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 8.7e-09 63.9 106 47.2
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 8.7e-09 63.9 107 37.4
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 3.3e-08 62.0 109 35.8
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 4.3e-08 61.6 41 70.7
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 4.3e-08 61.6 105 37.1
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.6e-07 59.7 106 35.8
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.6e-07 59.7 106 38.7
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.1e-07 59.3 106 43.4
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 2.1e-07 59.3 105 52.4
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 2.8e-07 58.9 107 36.4
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.8e-07 58.9 104 44.2
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 3.6e-07 58.5 109 35.8
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 4.8e-07 58.2 106 51.9
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 4.8e-07 58.2 106 51.9
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 6.2e-07 57.8 41 65.9
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 6.2e-07 57.8 108 54.6
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 1.1e-06 57.0 108 38.0
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-06 57.0 106 50.9
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 1.4e-06 56.6 104 57.7
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 2.4e-06 55.8 108 65.7
Sp3g22000 Schrenkiella parvula HOM05D005842 ORTHO05D007077 4.0e-06 55.1 108 54.6
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 5.3e-06 54.7 35 77.1
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 5.3e-06 54.7 41 65.9
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 6.9e-06 54.3 101 57.4
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 6.9e-06 54.3 106 34.0
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 9.0e-06 53.9 109 46.8


User provided reference genes

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