Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 4.5e-89 331.3 170 100.0
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 2.9e-88 328.6 170 98.8
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 1.4e-87 326.2 170 98.2
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 4.2e-87 324.7 170 97.1
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 9.4e-87 323.6 170 97.1
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 2.1e-86 322.4 170 96.5
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 2.1e-86 322.4 170 96.5
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 3.6e-86 321.6 170 95.3
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 95.9
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 97.1
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 97.1
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 97.1
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 94.7
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 6.1e-86 320.9 170 95.9
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 95.3
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 95.9
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 95.9
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 94.7
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 95.9
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 95.9
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 95.3
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 1.8e-85 319.3 169 98.2
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 1.8e-85 319.3 170 94.7
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 2.3e-85 318.9 170 94.7
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 2.3e-85 318.9 170 94.7
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 2.3e-85 318.9 170 94.7
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 3.0e-85 318.5 170 95.3
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 3.0e-85 318.5 169 95.3
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 3.9e-85 318.2 170 94.1
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 5.2e-85 317.8 170 94.7
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 5.2e-85 317.8 170 94.1
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 8.8e-85 317.0 166 97.0
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 8.8e-85 317.0 170 93.5
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 1.5e-84 316.2 169 97.0
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 1.5e-84 316.2 170 94.7
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 1.5e-84 316.2 170 94.7
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 3.3e-84 315.1 170 94.7
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 3.3e-84 315.1 170 94.1
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 3.3e-84 315.1 168 94.6
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 3.3e-84 315.1 168 94.6
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 3.3e-84 315.1 168 94.6
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 4.4e-84 314.7 170 93.5
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 4.4e-84 314.7 170 94.1
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 5.7e-84 314.3 170 92.9
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 1.3e-83 313.2 169 93.5
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 1.7e-83 312.8 170 93.5
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 1.7e-83 312.8 168 92.3
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 1.7e-83 312.8 170 92.9
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 1.7e-83 312.8 170 92.9
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 2.2e-83 312.4 166 95.8
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 2.8e-83 312.0 170 92.4
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 2.8e-83 312.0 170 92.9
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 3.7e-83 311.6 170 92.4
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 3.7e-83 311.6 170 92.4
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 3.7e-83 311.6 170 92.4
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 3.7e-83 311.6 170 92.9
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 4.8e-83 311.2 168 92.9
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 6.3e-83 310.8 170 92.4
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.4e-82 309.7 176 91.5
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 7.0e-82 307.4 170 91.2
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 9.1e-82 307.0 170 90.6
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 1.6e-81 306.2 166 91.6
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 2.6e-81 305.4 183 87.4
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 5.9e-81 304.3 170 91.8
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 7.7e-81 303.9 165 91.5
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 7.7e-81 303.9 183 86.9
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 3.8e-80 301.6 170 92.4
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 6.5e-80 300.8 170 88.2
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 6.5e-80 300.8 188 83.0
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.1e-79 300.1 190 84.7
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 2.1e-78 295.8 157 94.3
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 2.7e-78 295.4 164 90.2
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 6.7e-77 290.8 157 93.0
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 1.5e-76 289.7 168 85.7
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 5.7e-76 287.7 167 85.6
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 2.2e-75 285.8 175 86.9
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 6.3e-75 284.3 162 90.1
MELO3C020359.2 Cucumis melo HOM05D006777 ORTHO05D008360 1.4e-74 283.1 151 94.0
unitig_37.g12031 Utricularia gibba HOM05D006777 ORTHO05D008360 1.8e-74 282.7 151 93.4
Duzib212G0541 Durio zibethinus HOM05D006777 ORTHO05D008360 3.1e-74 282.0 147 97.3
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 1.2e-73 280.0 150 93.3
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 1.6e-73 279.6 164 86.0
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 2.2e-72 275.8 139 100.0
CsaV3_3G018320 Cucumis sativus L. HOM05D006777 ORTHO05D008360 3.8e-72 275.0 147 93.9
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 1.9e-71 272.7 139 98.6
Sabra17G0050600 Salix brachista HOM05D006777 ORTHO05D008360 1.9e-71 272.7 147 93.9
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 2.7e-70 268.9 140 95.7
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 1.2e-68 263.5 140 93.6
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 1.5e-68 263.1 169 74.6
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 2.6e-68 262.3 139 95.0
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 3.7e-67 258.5 170 80.0
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 4.1e-66 255.0 262 58.4
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 2.7e-65 252.3 164 80.5
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 1.9e-63 246.1 128 97.7
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 2.7e-62 242.3 170 78.2
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 6.1e-62 241.1 170 77.1
PGSC0003DMG402004570 Solanum tuberosum HOM05D006777 ORTHO05D008360 1.4e-61 240.0 130 93.8
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 2.3e-61 239.2 168 76.2
Haze_11625 Corylus avellana HOM05D006777 ORTHO05D008360 2.4e-58 229.2 229 61.6
Lj6A528G35 Lonicera japonica HOM05D006777 ORTHO05D008360 2.7e-57 225.7 125 92.8
CSS0009293 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 7.7e-57 224.2 120 95.8
CSS0028561 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 7.7e-57 224.2 120 95.8
SGA_v2.0_scaffold4G02170 Striga asiatica HOM05D006777 ORTHO05D008360 1.7e-56 223.0 233 58.4
SHI07424 Sapria himalayana HOM05D006777 ORTHO05D008360 4.3e-55 218.4 129 85.3
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 4.4e-52 208.4 110 96.4
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 4.9e-51 204.9 109 96.3
Haze_27630 Corylus avellana HOM05D006777 ORTHO05D008360 2.4e-50 202.6 169 60.4
QL06p026356 Quercus lobata HOM05D000003 ORTHO05D008360 3.7e-43 178.7 115 80.9
Cre06.g260800 Chlamydomonas reinhardtii HOM05D006777 ORTHO05D008360 1.9e-42 176.4 176 52.3
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 1.5e-39 166.8 170 57.1
vmacro00459 Vaccinium macrocarpon HOM05D006777 ORTHO05D008360 1.9e-34 149.8 117 69.2
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 1.7e-32 143.3 76 93.4
CAN.G767.6 Capsicum annuum HOM05D006777 ORTHO05D008360 5.1e-32 141.7 75 92.0
ECA248G0011 Erigeron canadensis HOM05D006777 ORTHO05D008360 8.6e-32 141.0 75 92.0
Lj3P402T13 Lonicera japonica HOM05D006777 ORTHO05D008360 2.1e-25 119.8 73 79.5
Cpa.g.c27575.2 Carica papaya HOM05D006777 ORTHO05D008360 1.7e-24 116.7 60 95.0
Cc00_g31310 Coffea canephora HOM05D006777 ORTHO05D008360 8.6e-24 114.4 69 87.0
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 6.4e-19 98.2 50 94.0
CSS0011736 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 4.5e-12 75.5 38 86.8
CSS0009674 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 1.2e-09 67.4 39 79.5
Lj3A409T19 Lonicera japonica HOM05D006777 ORTHO05D008360 7.4e-07 58.2 59 57.6


User provided reference genes

Program Settings