Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 6.8e-168 594.0 312 100.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.3e-16 88.6 73 64.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.7e-15 87.0 73 61.6
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.7e-15 87.0 73 63.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.0e-14 85.1 73 61.6
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.9e-14 83.2 73 60.3
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.1e-13 81.6 73 60.3
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.5e-13 80.5 69 59.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.3e-13 80.1 73 57.5
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 4.3e-13 79.7 74 55.4
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 5.7e-13 79.3 73 57.5
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 5.7e-13 79.3 73 57.5
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 9.7e-13 78.6 73 56.2
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 9.7e-13 78.6 73 56.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 9.7e-13 78.6 73 56.2
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.3e-12 78.2 73 54.8
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.2e-12 77.4 73 54.8
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.2e-12 77.4 73 54.8
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.8e-12 77.0 73 54.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 3.7e-12 76.6 69 55.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 3.7e-12 76.6 77 53.2
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.8e-12 76.3 73 53.4
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 4.8e-12 76.3 69 56.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 6.3e-12 75.9 73 53.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 6.3e-12 75.9 73 53.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 6.3e-12 75.9 73 53.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 8.2e-12 75.5 73 52.1
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 8.2e-12 75.5 77 51.9
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 8.2e-12 75.5 77 51.9
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 8.2e-12 75.5 77 51.9
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 8.2e-12 75.5 75 49.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-11 75.1 73 53.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.1e-11 75.1 75 49.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.4e-11 74.7 73 53.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.8e-11 74.3 69 52.2
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.8e-11 74.3 95 45.3
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.4e-11 73.9 73 50.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.4e-11 73.9 69 50.7
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 2.4e-11 73.9 69 53.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.1e-11 73.6 77 48.1
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.1e-11 73.6 69 52.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 5.3e-11 72.8 69 50.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.3e-11 72.8 77 48.1
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 5.3e-11 72.8 73 50.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.9e-11 72.4 77 48.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 6.9e-11 72.4 73 52.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 6.9e-11 72.4 77 48.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 9.0e-11 72.0 69 46.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 9.0e-11 72.0 73 50.7
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.5e-10 71.2 77 51.9
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.0e-10 70.9 73 49.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.0e-10 70.9 77 46.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 2.6e-10 70.5 69 49.3
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.6e-10 70.5 69 47.8
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.4e-10 70.1 69 49.3
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.5e-10 69.7 69 49.3
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 4.5e-10 69.7 69 49.3
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.5e-10 69.7 73 49.3
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.5e-10 69.7 87 42.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.5e-10 69.7 73 46.6
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 4.5e-10 69.7 77 46.8
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 4.5e-10 69.7 69 49.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 5.9e-10 69.3 74 45.9
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 5.9e-10 69.3 73 46.6
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.9e-10 69.3 73 49.3
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 7.6e-10 68.9 69 47.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 7.6e-10 68.9 74 44.6
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 7.6e-10 68.9 87 42.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.6e-10 68.9 73 47.9
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.0e-09 68.6 69 44.9
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.0e-09 68.6 73 47.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.0e-09 68.6 69 47.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.0e-09 68.6 69 44.9
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.3e-09 68.2 69 49.3
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.3e-09 68.2 73 46.6
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.3e-09 68.2 110 40.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.7e-09 67.8 73 49.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.7e-09 67.8 73 49.3
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.7e-09 67.8 73 47.9
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.7e-09 67.8 73 49.3
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.7e-09 67.8 73 49.3
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 2.9e-09 67.0 73 46.6
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.9e-09 67.0 69 43.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.8e-09 66.6 116 37.9
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.8e-09 66.6 73 49.3
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.8e-09 66.6 75 44.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.8e-09 66.6 69 46.4
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 3.8e-09 66.6 75 46.7
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 3.8e-09 66.6 73 43.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 5.0e-09 66.2 69 46.4
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.0e-09 66.2 68 48.5
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 5.0e-09 66.2 70 45.7
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 6.5e-09 65.9 73 47.9
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-09 65.9 96 39.6
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-09 65.9 96 39.6
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-09 65.9 96 39.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.5e-09 65.9 73 47.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.5e-09 65.9 73 47.9
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 6.5e-09 65.9 73 43.8
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 8.5e-09 65.5 73 46.6
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 8.5e-09 65.5 70 47.1
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.5e-09 65.5 70 47.1
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 8.5e-09 65.5 73 43.8
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 8.5e-09 65.5 73 47.9
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.1e-08 65.1 73 43.8
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-08 64.7 69 47.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.9e-08 64.3 86 39.5
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.2e-08 63.5 74 50.0
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.2e-08 63.5 69 46.4
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 3.2e-08 63.5 73 42.5
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 7.2e-08 62.4 73 42.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-08 62.4 73 41.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-08 62.4 73 42.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-08 62.4 73 42.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-08 62.4 73 42.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 9.3e-08 62.0 70 45.7
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.2e-07 61.6 74 48.6
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.2e-07 61.6 73 45.2
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.6e-07 61.2 73 42.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.1e-07 60.8 74 43.2
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.6e-07 60.1 52 53.8
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.6e-07 59.7 74 43.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 4.6e-07 59.7 98 35.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.6e-07 59.7 74 44.6
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 7.9e-07 58.9 73 37.0
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.0e-06 58.5 73 41.1
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.3e-06 58.2 69 42.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.3e-06 58.2 74 43.2
BcaB05g25184 Brassica carinata HOM05D011004 ORTHO05D090931 1.8e-06 57.8 38 76.3
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.9e-06 56.6 69 40.6
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.9e-06 56.6 69 40.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.9e-06 56.6 74 43.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 5.1e-06 56.2 69 42.0
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 5.1e-06 56.2 73 42.5
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 6.7e-06 55.8 69 40.6
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 6.7e-06 55.8 73 39.7
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 6.7e-06 55.8 74 40.5


User provided reference genes

Program Settings