Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 0.0e+00 1442.2 745 100.0
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 0.0e+00 1389.8 745 97.4
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 0.0e+00 1320.1 757 92.9
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 0.0e+00 1210.7 750 87.2
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 0.0e+00 1209.5 753 86.9
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.1e-261 906.7 795 69.2
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.3e-233 813.5 807 64.3
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.0e-222 777.3 810 62.3
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 5.9e-218 761.5 799 61.0
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 9.5e-208 727.6 807 59.4
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 4.1e-203 712.2 768 60.7
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 9.2e-195 684.5 739 61.4
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.9e-192 676.8 896 52.9
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 2.5e-192 676.4 768 59.4
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.5e-189 667.2 768 59.1
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.0e-185 654.4 771 57.3
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 2.6e-181 639.8 771 57.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.5e-139 500.4 805 47.2
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.3e-79 302.0 858 36.1
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.8e-23 114.4 917 23.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 4.9e-23 114.0 769 23.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.6e-21 107.5 885 23.7
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 4.6e-21 107.5 349 29.8
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 6.1e-21 107.1 959 22.6
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 3.0e-20 104.8 953 22.7
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.9e-20 104.4 936 22.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 6.7e-20 103.6 570 26.0
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.5e-19 101.7 126 45.2
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 2.5e-19 101.7 126 45.2
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 3.7e-18 97.8 123 47.2
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.4e-17 95.9 129 42.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.8e-17 95.5 184 35.3
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.4e-17 95.1 132 42.4
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.3e-17 94.0 123 46.3
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.3e-17 94.0 205 30.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.2e-16 92.8 113 47.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.0e-16 92.0 329 28.9
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.0e-16 92.0 127 41.7
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.0e-16 92.0 123 45.5
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 3.4e-16 91.3 973 22.3
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.4e-16 91.3 264 31.4
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.4e-16 91.3 133 40.6
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.5e-16 90.9 161 38.5
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.9e-16 90.5 123 46.3
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 7.7e-16 90.1 123 43.1
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.0e-15 89.7 128 43.0
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.0e-15 89.7 267 28.8
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.0e-15 89.7 456 25.7
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.2e-15 88.6 725 22.8
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 6.5e-15 87.0 129 40.3
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.5e-15 86.7 225 32.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 8.5e-15 86.7 109 42.2
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 8.5e-15 86.7 130 40.0
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.9e-14 85.5 513 24.4
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.5e-14 85.1 884 23.9
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.2e-14 84.7 143 35.7
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 3.2e-14 84.7 555 24.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 5.5e-14 84.0 98 45.9
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 5.5e-14 84.0 140 36.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 5.5e-14 84.0 243 31.3
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 7.2e-14 83.6 110 40.0
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 7.2e-14 83.6 893 21.3
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.4e-14 83.2 905 23.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.6e-13 82.4 119 42.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 2.1e-13 82.0 148 34.5
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.7e-13 81.6 976 21.2
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.7e-13 81.6 893 22.7
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 4.6e-13 80.9 114 40.4
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 6.1e-13 80.5 328 27.7
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 6.1e-13 80.5 100 44.0
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 7.9e-13 80.1 446 24.2
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.0e-12 79.7 616 23.7
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.0e-12 79.7 497 24.3
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.4e-12 79.3 94 41.5
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-12 79.3 76 51.3
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.4e-12 79.3 151 36.4
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.4e-12 79.3 322 27.3
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-12 79.0 116 38.8
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.8e-12 79.0 127 38.6
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.8e-12 79.0 245 27.8
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.3e-12 78.6 121 38.8
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.3e-12 78.6 121 38.8
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.0e-12 78.2 238 30.7
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 3.0e-12 78.2 122 36.1
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 3.0e-12 78.2 171 31.6
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 3.0e-12 78.2 102 43.1
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.0e-12 78.2 241 28.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.1e-12 77.4 817 23.5
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 8.8e-12 76.6 76 51.3
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 8.8e-12 76.6 977 21.8
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.1e-11 76.3 123 38.2
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 2.0e-11 75.5 147 36.1
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.0e-11 75.5 159 34.6
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 2.5e-11 75.1 88 40.9
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.5e-11 75.1 516 25.4
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-11 75.1 778 23.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.3e-11 74.3 95 44.2
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 4.3e-11 74.3 238 28.6
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.3e-10 72.8 114 40.4
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-10 72.4 219 29.7
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-10 72.4 141 37.6
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.7e-10 71.2 117 39.3
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.8e-10 70.9 114 42.1
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 4.8e-10 70.9 801 20.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.8e-10 70.9 102 37.3
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 6.3e-10 70.5 147 34.0
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 6.3e-10 70.5 32 81.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 8.2e-10 70.1 68 47.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.2e-10 70.1 114 42.1
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.1e-09 69.7 572 22.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.4e-09 69.3 116 37.9
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-09 68.9 47 59.6
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.4e-09 68.6 522 23.4
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 3.1e-09 68.2 628 23.2
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 5.3e-09 67.4 100 36.0
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 9.1e-09 66.6 101 37.6
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.2e-08 66.2 132 34.1
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.2e-08 66.2 847 21.4
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 1.5e-08 65.9 881 19.6
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 2.6e-08 65.1 39 61.5
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.4e-08 64.7 101 40.6
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 4.5e-08 64.3 684 20.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 7.7e-08 63.5 871 22.4
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.0e-07 63.2 240 26.2
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.7e-07 62.4 34 67.6
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 2.9e-07 61.6 42 59.5
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 3.8e-07 61.2 481 24.7
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 6.5e-07 60.5 31 71.0
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 6.5e-07 60.5 879 20.1
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 8.5e-07 60.1 60 48.3
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.9e-06 58.9 661 23.1
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.9e-06 58.9 362 24.9
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.5e-06 58.5 292 26.4
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.5e-06 58.5 120 35.8
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 4.2e-06 57.8 58 44.8


User provided reference genes

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