Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 5.9e-89 330.9 170 100.0
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 6.8e-29 131.3 68 100.0
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 6.8e-29 131.3 68 100.0
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.8e-19 99.0 70 77.1
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.3e-16 89.7 70 74.3
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 3.9e-16 89.0 69 73.9
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 3.9e-16 89.0 65 73.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 3.9e-16 89.0 65 73.8
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 3.9e-16 89.0 110 54.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 8.7e-16 87.8 65 72.3
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 1.1e-15 87.4 65 72.3
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.5e-15 87.0 65 72.3
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.6e-15 85.1 70 70.0
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 9.6e-15 84.3 70 70.0
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 3.1e-13 79.3 67 70.1
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 5.3e-13 78.6 65 69.2
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.5e-12 75.5 76 61.8
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 9.9e-12 74.3 76 61.8
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 9.9e-12 74.3 84 53.6
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.2e-11 73.2 99 44.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 4.9e-11 72.0 71 56.3
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.1e-10 70.9 105 48.6
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.4e-10 69.7 77 54.5
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 3.2e-10 69.3 75 53.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.2e-10 69.3 77 54.5
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.2e-10 69.3 67 58.2
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 4.2e-10 68.9 123 35.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 5.4e-10 68.6 67 58.2
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 5.4e-10 68.6 67 58.2
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 5.4e-10 68.6 67 58.2
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 5.4e-10 68.6 64 59.4
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 5.4e-10 68.6 78 55.1
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 5.4e-10 68.6 77 54.5
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 7.1e-10 68.2 85 48.2
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 7.1e-10 68.2 78 55.1
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 7.1e-10 68.2 86 51.2
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 7.1e-10 68.2 76 52.6
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.1e-10 68.2 76 52.6
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 7.1e-10 68.2 94 46.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 9.3e-10 67.8 84 50.0
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.2e-09 67.4 135 38.5
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.2e-09 67.4 89 47.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.6e-09 67.0 75 50.7
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.6e-09 67.0 97 42.3
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.6e-09 67.0 79 46.8
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.6e-09 67.0 79 46.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.7e-09 66.2 70 50.0
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 3.5e-09 65.9 75 52.0
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 3.5e-09 65.9 65 58.5
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 4.6e-09 65.5 59 61.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.6e-09 65.5 86 48.8
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 6.0e-09 65.1 65 55.4
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.0e-09 65.1 92 46.7
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 6.0e-09 65.1 65 55.4
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 6.0e-09 65.1 55 65.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 7.9e-09 64.7 72 51.4
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 7.9e-09 64.7 98 40.8
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.0e-08 64.3 76 52.6
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.0e-08 64.3 78 51.3
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.0e-08 64.3 91 45.1
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.0e-08 64.3 55 65.5
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.3e-08 63.9 71 52.1
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.3e-08 63.9 69 53.6
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.3e-08 63.9 64 53.1
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.8e-08 63.5 66 54.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.8e-08 63.5 94 43.6
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.8e-08 63.5 55 61.8
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.3e-08 63.2 76 50.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.3e-08 63.2 55 61.8
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 2.3e-08 63.2 78 51.3
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.3e-08 63.2 78 51.3
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.3e-08 63.2 64 57.8
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.3e-08 63.2 55 61.8
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 3.0e-08 62.8 100 41.0
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 3.0e-08 62.8 55 61.8
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.0e-08 62.8 66 54.5
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.0e-08 62.8 71 47.9
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.9e-08 62.4 78 50.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.9e-08 62.4 55 61.8
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 5.1e-08 62.0 81 49.4
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.1e-08 62.0 72 50.0
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.1e-08 62.0 65 53.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 5.1e-08 62.0 78 48.7
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 6.7e-08 61.6 87 44.8
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 6.7e-08 61.6 82 48.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 6.7e-08 61.6 55 60.0
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 8.7e-08 61.2 68 50.0
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 8.7e-08 61.2 101 38.6
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.1e-07 60.8 55 60.0
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.5e-07 60.5 53 62.3
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.5e-07 60.5 82 46.3
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.5e-07 60.5 65 53.8
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.5e-07 60.5 55 60.0
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 1.5e-07 60.5 61 55.7
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.5e-07 60.5 55 56.4
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.9e-07 60.1 55 60.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 1.9e-07 60.1 55 58.2
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.5e-07 59.7 66 50.0
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.5e-07 59.7 62 56.5
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 2.5e-07 59.7 53 62.3
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.5e-07 59.7 75 50.7
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.3e-07 59.3 62 54.8
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 4.3e-07 58.9 58 53.4
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 4.3e-07 58.9 70 48.6
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 4.3e-07 58.9 55 58.2
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 5.6e-07 58.5 55 56.4
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.4e-07 58.2 55 56.4
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 9.6e-07 57.8 61 57.4
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.3e-06 57.4 100 40.0
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.6e-06 57.0 55 52.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.6e-06 57.0 72 52.8
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 3.7e-06 55.8 53 60.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 4.8e-06 55.5 55 56.4
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 4.8e-06 55.5 84 42.9


User provided reference genes

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