Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 4.0e-100 368.2 206 100.0
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 4.0e-100 368.2 206 100.0
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 9.9e-99 363.6 206 99.0
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 5.4e-97 357.8 206 97.1
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 9.3e-97 357.1 206 93.7
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 6.9e-92 340.9 209 94.7
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 4.3e-78 295.0 208 83.7
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 9.7e-78 293.9 207 79.2
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 5.9e-75 284.6 209 78.5
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 4.6e-72 275.0 206 75.2
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 6.5e-66 254.6 229 65.9
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 2.5e-57 226.1 206 68.4
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.3e-45 187.2 202 55.9
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 4.1e-44 182.2 214 54.2
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 7.7e-43 177.9 201 53.2
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 7.7e-43 177.9 206 53.4
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 2.5e-41 172.9 201 53.2
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 3.7e-37 159.1 214 49.5
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 4.8e-37 158.7 186 52.7
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 1.4e-36 157.1 186 53.2
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 4.5e-35 152.1 211 48.3
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.2e-23 112.1 216 37.5
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 2.0e-22 110.2 207 37.7
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 2.6e-22 109.8 206 39.3
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.8e-22 107.8 208 39.9
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 2.7e-19 99.8 65 76.9
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.3e-18 97.4 214 36.9
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 1.7e-18 97.1 204 34.8
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 5.0e-18 95.5 211 36.5
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 6.6e-18 95.1 206 34.5
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 5.6e-17 92.0 205 37.1
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.2e-16 90.9 205 37.1
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 2.1e-16 90.1 204 36.3
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 1.1e-15 87.8 198 34.8
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 1.4e-15 87.4 198 35.4
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 1.4e-15 87.4 192 37.0
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 4.0e-15 85.9 211 35.5
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 6.8e-15 85.1 209 34.0
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 6.8e-15 85.1 198 34.3
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 7.5e-14 81.6 213 33.8
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 1.7e-13 80.5 209 33.5
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 2.2e-13 80.1 207 32.4
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 2.9e-13 79.7 206 30.6
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 2.9e-13 79.7 210 31.9
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 2.9e-13 79.7 220 35.5
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 4.9e-13 79.0 202 34.7
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 4.9e-13 79.0 209 32.5
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.4e-12 77.4 206 30.1
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 1.9e-12 77.0 213 30.5
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 4.1e-12 75.9 236 32.6
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 5.4e-12 75.5 207 33.3
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 5.4e-12 75.5 210 31.4
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 5.4e-12 75.5 212 34.0
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 7.0e-12 75.1 81 56.8
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 9.2e-12 74.7 218 32.1
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.2e-11 74.3 205 34.1
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.2e-11 74.3 53 69.8
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 3.5e-11 72.8 207 30.4
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 1.0e-10 71.2 214 31.3
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 1.0e-10 71.2 214 31.8
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 2.3e-10 70.1 54 70.4
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 2.3e-10 70.1 214 30.8
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 3.0e-10 69.7 215 28.8
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 3.9e-10 69.3 208 29.3
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 6.6e-10 68.6 65 52.3
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.1e-09 67.8 209 31.1
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.5e-09 67.4 179 30.2
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 1.5e-09 67.4 212 31.6
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 5.6e-09 65.5 238 29.0
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 7.3e-09 65.1 228 29.8
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.6e-08 63.9 233 33.5
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 2.1e-08 63.5 54 55.6
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 8.1e-08 61.6 209 33.0
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 1.4e-07 60.8 199 29.6
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 6.8e-07 58.5 208 29.8
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 8.9e-07 58.2 216 25.5
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 2.6e-06 56.6 203 25.6
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 3.4e-06 56.2 88 38.6
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 4.4e-06 55.8 213 29.1


User provided reference genes

Program Settings