Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 9.5e-57 223.4 122 100.0
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 9.5e-57 223.4 122 100.0
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 7.8e-51 203.8 122 86.9
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 1.7e-50 202.6 122 86.1
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 6.6e-50 200.7 121 84.3
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 5.6e-49 197.6 123 87.0
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 9.5e-49 196.8 123 85.4
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 9.5e-49 196.8 123 85.4
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 8.9e-47 190.3 122 83.6
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 5.8e-46 187.6 122 82.0
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 5.8e-46 187.6 124 82.3
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.3e-45 186.4 122 84.4
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 3.7e-45 184.9 122 81.1
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 3.7e-45 184.9 122 81.1
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 3.7e-45 184.9 122 81.1
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 2.5e-41 172.2 82 100.0
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.2e-40 169.9 124 78.2
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 8.9e-39 163.7 117 77.8
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 1.5e-38 162.9 84 89.3
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.7e-37 159.5 122 70.5
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.8e-30 134.4 81 70.4
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 9.9e-30 133.7 77 74.0
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 9.9e-30 133.7 81 70.4
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 9.9e-30 133.7 81 71.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.3e-29 133.3 77 74.0
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.7e-29 132.9 76 73.7
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 8.4e-29 130.6 77 70.1
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 8.4e-29 130.6 77 70.1
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 1.4e-28 129.8 105 57.1
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 1.9e-28 129.4 81 67.9
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 1.9e-28 129.4 76 69.7
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 2.4e-28 129.0 79 68.4
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 3.2e-28 128.6 77 67.5
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 3.2e-28 128.6 77 70.1
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 3.2e-28 128.6 77 70.1
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 4.2e-28 128.3 76 68.4
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 4.2e-28 128.3 115 53.9
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.4e-28 127.9 75 72.0
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 5.4e-28 127.9 77 70.1
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 5.4e-28 127.9 76 69.7
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 7.1e-28 127.5 75 72.0
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 9.3e-28 127.1 77 68.8
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 9.3e-28 127.1 76 69.7
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 1.6e-27 126.3 78 67.9
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 1.6e-27 126.3 77 66.2
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.6e-27 126.3 76 67.1
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 2.1e-27 125.9 75 68.0
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 2.1e-27 125.9 77 70.1
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 2.1e-27 125.9 74 73.0
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 2.1e-27 125.9 76 67.1
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 2.1e-27 125.9 79 67.1
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 3.5e-27 125.2 77 67.5
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 3.5e-27 125.2 74 71.6
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 4.6e-27 124.8 110 55.5
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 4.6e-27 124.8 76 67.1
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 4.6e-27 124.8 77 66.2
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 6.0e-27 124.4 119 50.4
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 7.8e-27 124.0 74 70.3
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 1.0e-26 123.6 113 51.3
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 1.3e-26 123.2 73 72.6
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.3e-26 123.2 77 64.9
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 1.3e-26 123.2 77 66.2
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.7e-26 122.9 77 68.8
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.7e-26 122.9 74 68.9
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.7e-26 122.9 77 64.9
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 3.0e-26 122.1 111 51.4
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 3.9e-26 121.7 73 71.2
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 5.1e-26 121.3 120 50.8
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 5.1e-26 121.3 74 70.3
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.1e-26 121.3 77 67.5
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.1e-26 121.3 77 67.5
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 5.1e-26 121.3 114 53.5
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 6.6e-26 120.9 74 70.3
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 6.6e-26 120.9 75 68.0
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 8.7e-26 120.6 75 66.7
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 8.7e-26 120.6 112 51.8
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 8.7e-26 120.6 75 68.0
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-25 120.2 73 68.5
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 1.1e-25 120.2 71 73.2
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 1.5e-25 119.8 74 68.9
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 1.9e-25 119.4 76 67.1
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.9e-25 119.4 108 55.6
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 2.5e-25 119.0 106 54.7
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 3.3e-25 118.6 74 68.9
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 4.3e-25 118.2 77 64.9
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 7.3e-25 117.5 75 66.7
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 9.6e-25 117.1 74 67.6
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 2.1e-24 115.9 77 66.2
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 2.1e-24 115.9 75 70.7
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 2.8e-24 115.5 105 55.2
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.8e-24 115.5 74 66.2
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 3.6e-24 115.2 118 47.5
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 4.8e-24 114.8 74 66.2
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 6.2e-24 114.4 75 65.3
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 8.1e-24 114.0 75 64.0
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 8.1e-24 114.0 75 64.0
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 8.1e-24 114.0 75 64.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 8.1e-24 114.0 75 64.0
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.4e-23 113.2 73 64.4
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 3.1e-23 112.1 64 73.4
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 4.0e-23 111.7 110 51.8
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 5.3e-23 111.3 76 64.5
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 9.0e-23 110.5 75 60.0
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 9.0e-23 110.5 75 60.0
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 9.0e-23 110.5 75 60.0
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 9.0e-23 110.5 74 62.2
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.2e-22 110.2 75 61.3
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 7.6e-22 107.5 75 58.7
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 7.6e-22 107.5 75 58.7
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 2.1e-19 99.4 74 56.8
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.3e-18 96.7 74 54.1
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 3.0e-18 95.5 74 51.4
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.0e-18 95.5 64 65.6
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.0e-18 95.5 64 65.6
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 3.9e-18 95.1 74 54.1
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 3.9e-18 95.1 54 75.9
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 6.6e-18 94.4 59 67.8
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.6e-16 89.7 60 61.7
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.2e-14 83.6 74 48.6
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 2.4e-12 75.9 70 50.0
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 7.4e-09 64.3 118 35.6
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 2.1e-08 62.8 68 44.1
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 2.4e-07 59.3 70 42.9
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 5.3e-07 58.2 69 39.1
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 5.3e-07 58.2 70 41.4
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 6.9e-07 57.8 69 37.7
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 9.0e-07 57.4 65 40.0
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 1.5e-06 56.6 65 40.0
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 2.6e-06 55.8 65 40.0


User provided reference genes

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