Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.5e-242 840.9 442 100.0
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.5e-216 756.1 465 89.0
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.5e-216 756.1 465 89.0
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 3.3e-176 622.1 489 75.1
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.2e-170 603.6 484 74.0
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 2.2e-159 566.2 513 67.6
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.3e-143 513.8 510 62.5
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 9.1e-134 481.1 507 59.6
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 9.8e-128 461.1 457 63.7
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 4.9e-127 458.8 458 63.5
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.8e-121 440.3 515 55.9
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.3e-115 419.5 510 54.5
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 9.6e-99 364.8 502 49.4
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 5.4e-94 349.0 493 48.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.7e-55 221.1 544 38.1
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 3.3e-43 180.3 317 48.3
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 9.4e-38 162.2 462 31.8
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 6.1e-37 159.5 527 31.7
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 8.0e-37 159.1 528 31.1
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.3e-36 157.5 481 34.1
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.0e-36 156.8 462 33.3
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 4.0e-36 156.8 529 31.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.1e-35 155.2 484 33.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.6e-35 154.1 472 32.4
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 2.6e-35 154.1 493 32.7
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 4.4e-35 153.3 450 32.7
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 9.7e-35 152.1 449 34.5
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.3e-34 151.8 449 33.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.7e-34 151.4 469 31.8
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.2e-34 151.0 466 31.5
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.8e-34 150.6 457 34.1
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 3.7e-34 150.2 475 32.8
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 4.8e-34 149.8 465 31.6
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 4.8e-34 149.8 480 31.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.8e-33 147.9 456 33.1
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.4e-33 147.5 470 33.8
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 5.3e-33 146.4 468 33.1
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 7.0e-33 146.0 471 29.9
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 9.1e-33 145.6 486 32.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 9.1e-33 145.6 498 31.5
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 9.1e-33 145.6 476 30.3
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 9.1e-33 145.6 525 33.0
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.6e-32 144.1 451 32.2
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 4.5e-32 143.3 472 30.3
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.3e-31 141.7 462 31.8
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.3e-31 141.7 460 32.0
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.9e-31 140.6 492 29.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 3.8e-31 140.2 506 32.2
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 5.0e-31 139.8 456 32.2
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.1e-30 138.7 515 29.9
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.5e-30 137.5 461 32.3
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.5e-30 137.5 490 29.4
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.5e-30 137.5 466 31.8
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 3.2e-30 137.1 462 30.1
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.2e-30 136.7 513 28.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 7.2e-30 136.0 490 29.2
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 7.2e-30 136.0 462 32.7
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 9.4e-30 135.6 499 30.1
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 9.4e-30 135.6 486 29.2
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.1e-29 134.4 503 30.4
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.7e-29 134.0 481 33.1
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 3.6e-29 133.7 460 30.4
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 4.7e-29 133.3 534 29.6
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 6.1e-29 132.9 550 28.5
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 8.0e-29 132.5 547 29.1
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.0e-29 132.5 491 31.2
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.8e-28 131.3 480 29.0
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 2.3e-28 131.0 507 29.8
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.0e-28 130.6 474 29.3
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 3.0e-28 130.6 186 46.2
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 4.0e-28 130.2 507 28.6
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 8.8e-28 129.0 153 49.0
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 8.8e-28 129.0 121 57.9
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.2e-27 128.6 482 28.8
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.5e-27 128.3 510 29.6
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.5e-27 128.3 503 30.8
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.5e-27 128.3 343 36.4
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.0e-27 127.9 472 30.7
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 2.2e-26 124.4 505 28.3
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 4.8e-26 123.2 109 59.6
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.1e-25 122.1 206 40.3
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.4e-25 121.7 524 30.9
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.8e-25 121.3 302 33.4
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.4e-25 120.9 139 48.9
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 4.1e-25 120.2 504 27.2
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 5.4e-25 119.8 519 28.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 5.4e-25 119.8 490 28.6
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.2e-24 118.6 173 43.9
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 7.7e-24 115.9 492 27.8
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.0e-23 115.5 515 27.2
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 3.8e-23 113.6 504 28.0
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 5.0e-23 113.2 526 27.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 8.5e-23 112.5 413 31.5
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 5.5e-22 109.8 392 30.4
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 2.1e-21 107.8 90 58.9
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 3.6e-21 107.1 527 26.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 6.1e-21 106.3 251 34.7
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.0e-20 105.5 515 26.4
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-20 105.1 510 26.1
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 6.8e-20 102.8 470 28.9
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 8.8e-20 102.4 419 28.9
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.7e-18 97.1 75 62.7
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.8e-15 87.0 67 61.2
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.1e-14 85.5 406 24.9
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.5e-14 84.3 443 26.2
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 2.5e-14 84.3 160 36.2
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.6e-13 81.6 191 33.5
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 3.6e-13 80.5 254 27.6
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 6.1e-13 79.7 465 26.2
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.8e-12 78.2 411 26.3
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 2.3e-12 77.8 405 27.7
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 4.0e-12 77.0 420 27.1
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 6.8e-12 76.3 392 27.3
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 3.4e-11 73.9 246 32.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 4.4e-11 73.6 85 42.4
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 5.7e-11 73.2 79 39.2
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 7.5e-11 72.8 82 41.5
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.7e-10 71.6 70 44.3
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.2e-10 71.2 79 38.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.2e-10 71.2 95 33.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 2.2e-10 71.2 104 37.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.9e-10 70.9 75 40.0
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 4.9e-10 70.1 71 45.1
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.3e-10 69.3 79 36.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 8.3e-10 69.3 61 45.9
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.8e-09 68.2 77 37.7
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 2.4e-09 67.8 58 46.6
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 5.4e-09 66.6 68 42.6
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 5.4e-09 66.6 93 35.5
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 5.4e-09 66.6 76 38.2
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 7.0e-09 66.2 76 39.5
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.2e-09 65.9 55 49.1
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 1.2e-08 65.5 72 50.0
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.0e-08 64.7 50 52.0
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 2.0e-08 64.7 87 39.1
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 2.0e-08 64.7 424 25.9
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.7e-08 64.3 79 40.5
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 2.7e-08 64.3 63 46.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 2.7e-08 64.3 74 40.5
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 3.5e-08 63.9 77 37.7
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.6e-08 63.5 173 28.9
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 5.9e-08 63.2 81 38.3
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 7.8e-08 62.8 50 52.0
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 7.8e-08 62.8 60 43.3
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 7.8e-08 62.8 84 35.7
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.0e-07 62.4 50 52.0
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.0e-07 62.4 377 27.9
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 1.3e-07 62.0 141 33.3
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 1.3e-07 62.0 81 35.8
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.3e-07 62.0 112 29.5
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 1.3e-07 62.0 75 37.3
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.3e-07 62.0 71 36.6
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.7e-07 61.6 78 39.7
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 2.3e-07 61.2 54 42.6
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 2.3e-07 61.2 54 46.3
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.3e-07 61.2 71 35.2
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 3.0e-07 60.8 81 34.6
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 3.0e-07 60.8 75 36.0
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 3.9e-07 60.5 52 44.2
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 3.9e-07 60.5 75 34.7
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 3.9e-07 60.5 84 33.3
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 5.0e-07 60.1 107 33.6
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 5.0e-07 60.1 57 40.4
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 6.6e-07 59.7 85 30.6
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 8.6e-07 59.3 54 42.6
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 8.6e-07 59.3 60 40.0
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 8.6e-07 59.3 64 32.8
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 8.6e-07 59.3 67 41.8
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.5e-06 58.5 50 44.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 1.5e-06 58.5 50 44.0
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.5e-06 58.5 85 29.4
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 1.5e-06 58.5 62 40.3
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 1.9e-06 58.2 80 35.0
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.5e-06 57.8 308 25.6
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 2.5e-06 57.8 65 40.0
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 2.5e-06 57.8 222 24.3
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 3.3e-06 57.4 218 25.2
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 3.3e-06 57.4 296 25.3
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 3.3e-06 57.4 57 38.6
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 7.3e-06 56.2 50 42.0
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 9.5e-06 55.8 61 34.4
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 9.5e-06 55.8 294 22.8


User provided reference genes

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