Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 0.0e+00 1182.2 617 100.0
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 0.0e+00 1166.8 618 99.0
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 0.0e+00 1144.8 602 99.5
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.7e-279 965.7 650 82.9
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 3.6e-277 958.0 651 82.3
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 9.1e-273 943.3 662 80.8
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.6e-237 826.2 698 71.5
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 3.5e-216 755.4 697 65.4
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 6.6e-207 724.5 698 63.6
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 4.9e-202 708.4 694 62.8
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 9.3e-201 704.1 626 69.0
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 8.7e-199 697.6 687 63.2
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-198 697.2 650 67.5
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.1e-198 697.2 650 67.5
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.3e-198 695.7 651 67.7
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 2.8e-197 692.6 651 67.3
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.5e-187 660.2 635 66.1
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 1.0e-162 577.8 681 55.2
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.5e-97 361.3 676 43.6
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 2.6e-54 217.6 701 33.5
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.7e-53 214.9 616 35.7
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.2e-53 214.5 607 34.9
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.2e-51 208.8 707 32.1
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.6e-51 207.2 581 33.4
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 4.6e-51 206.8 701 31.2
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.0e-50 205.7 731 30.9
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 3.0e-50 204.1 583 35.3
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 5.1e-50 203.4 731 30.9
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 2.5e-49 201.1 596 34.4
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.3e-49 200.7 608 32.2
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 2.8e-48 197.6 707 32.5
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.1e-47 195.7 596 32.4
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.1e-47 195.7 733 30.8
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.4e-47 194.5 563 35.2
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 6.9e-47 193.0 601 32.6
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 9.1e-47 192.6 595 32.9
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 9.1e-47 192.6 609 32.5
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.6e-46 191.0 599 32.7
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 3.4e-46 190.7 610 33.4
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 5.9e-46 189.9 703 31.2
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.7e-45 188.3 589 32.6
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.4e-44 185.3 605 30.9
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.1e-43 181.4 686 30.3
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.4e-42 178.7 565 32.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 3.9e-42 177.2 624 30.8
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 6.7e-42 176.4 534 34.1
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.5e-41 175.3 707 30.6
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.3e-40 172.2 595 31.9
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 8.2e-40 169.5 556 33.5
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.1e-39 169.1 785 28.2
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.1e-39 169.1 574 33.1
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.4e-39 167.9 580 31.9
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.6e-38 165.2 556 31.5
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 2.0e-38 164.9 564 31.6
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 3.5e-38 164.1 540 31.3
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 7.7e-38 162.9 577 32.1
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 7.7e-38 162.9 588 31.8
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.0e-37 162.5 637 30.1
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.0e-37 162.5 601 30.1
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 1.3e-37 162.2 545 33.0
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 2.2e-37 161.4 539 30.4
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 2.2e-37 161.4 597 31.8
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 8.5e-37 159.5 536 31.3
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.5e-36 158.7 583 30.9
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.5e-36 157.9 566 30.2
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 9.4e-36 156.0 643 29.9
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.2e-35 155.6 560 31.6
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-35 155.2 573 30.4
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.1e-35 154.8 550 33.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 3.6e-35 154.1 694 28.2
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 4.7e-35 153.7 550 31.6
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 6.1e-35 153.3 535 32.1
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 3.0e-34 151.0 528 30.5
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 6.7e-34 149.8 616 29.7
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 8.8e-34 149.4 324 37.0
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.1e-33 149.1 513 33.7
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 3.3e-33 147.5 546 30.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.3e-33 147.5 573 29.3
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.5e-33 146.4 549 29.5
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 1.3e-32 145.6 558 29.7
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.3e-32 145.6 457 31.1
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 2.8e-32 144.4 520 28.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.8e-32 144.4 550 30.4
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.1e-31 142.5 569 29.2
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 3.1e-31 141.0 804 26.5
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.1e-31 140.6 548 29.7
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.6e-30 138.7 513 31.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.0e-30 138.3 529 30.4
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.5e-30 137.5 557 29.3
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 4.5e-30 137.1 534 31.3
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.5e-30 137.1 625 28.3
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 2.2e-29 134.8 508 29.9
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 5.0e-29 133.7 452 32.3
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 6.5e-29 133.3 520 30.6
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 6.1e-27 126.7 494 31.2
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 8.0e-27 126.3 500 30.0
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.0e-26 125.9 549 29.0
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.0e-26 125.9 295 36.9
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.0e-26 124.0 495 29.3
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 6.8e-26 123.2 549 28.8
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.2e-25 122.5 623 25.7
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 4.4e-25 120.6 534 30.1
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.7e-25 120.2 587 27.8
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.2e-24 118.2 498 28.7
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 4.8e-24 117.1 309 36.6
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 7.0e-23 113.2 567 29.8
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-22 111.7 629 25.8
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.2e-21 108.2 306 33.7
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 8.0e-19 99.8 532 26.9
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 8.0e-19 99.8 373 28.7
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.0e-18 97.8 373 29.5
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 4.0e-18 97.4 535 26.7
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 5.7e-17 93.6 360 28.6
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.4e-15 87.0 550 26.2
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 7.0e-15 86.7 474 28.5
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 7.0e-15 86.7 269 32.0
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 2.0e-14 85.1 205 37.6
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.8e-13 80.9 425 26.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.3e-12 77.8 83 50.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.2e-09 69.3 186 32.8
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.8e-07 62.0 320 28.4
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 9.2e-07 59.7 253 25.3
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 5.9e-06 57.0 580 25.5


User provided reference genes

Program Settings