Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 5.0e-190 667.5 321 100.0
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.7e-183 645.2 314 98.4
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 5.9e-183 644.0 321 96.3
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.6e-180 636.0 316 97.5
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.0e-179 633.3 316 96.8
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 2.3e-179 632.1 321 93.5
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 2.3e-179 632.1 321 94.4
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 6.8e-179 630.6 321 93.5
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 5.7e-178 627.5 316 96.2
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 8.3e-177 623.6 315 95.9
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 3.8e-174 614.8 305 95.7
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 3.0e-171 605.1 305 93.8
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 8.3e-169 597.0 318 89.9
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 1.4e-163 579.7 319 85.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 6.8e-163 577.4 315 87.6
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.2e-162 576.6 319 84.3
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.0e-162 575.9 320 84.1
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 7.5e-162 573.9 318 84.9
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 7.5e-162 573.9 319 84.3
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 2.9e-161 572.0 315 85.4
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 4.9e-161 571.2 319 85.0
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.1e-160 570.1 316 84.5
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.1e-160 570.1 319 84.0
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.1e-160 570.1 316 85.1
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 2.4e-160 568.9 316 85.1
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 7.0e-160 567.4 316 84.8
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 9.2e-160 567.0 321 83.5
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.2e-159 566.6 316 84.2
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.6e-159 566.2 316 84.2
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 2.7e-159 565.5 318 83.3
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.7e-158 562.8 315 83.2
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.0e-158 562.0 321 82.9
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 3.9e-158 561.6 319 83.1
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.3e-157 558.5 314 84.4
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.3e-157 558.5 318 82.4
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 4.3e-157 558.1 316 83.2
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 5.6e-157 557.8 314 84.1
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 5.6e-157 557.8 316 82.3
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 9.5e-157 557.0 318 81.1
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 9.5e-157 557.0 318 82.4
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.2e-156 556.6 318 82.7
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.1e-156 555.8 313 84.7
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 2.1e-156 555.8 321 81.3
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 3.6e-156 555.1 321 82.6
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.7e-156 554.7 319 83.1
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 4.7e-156 554.7 316 82.3
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 6.2e-156 554.3 321 80.7
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 1.4e-155 553.1 315 82.5
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.8e-155 552.7 319 81.5
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 2.3e-155 552.4 314 83.1
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 6.8e-155 550.8 303 85.8
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.5e-154 549.7 313 82.7
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.6e-154 548.9 319 81.2
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 4.4e-154 548.1 316 82.0
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 7.5e-154 547.4 316 81.6
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 7.5e-154 547.4 318 81.4
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 7.5e-154 547.4 314 81.2
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 9.9e-154 547.0 314 80.9
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.7e-153 546.2 327 78.9
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.2e-153 545.8 318 80.8
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 4.9e-153 544.7 305 83.6
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 6.4e-153 544.3 317 81.7
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.4e-152 543.1 311 80.7
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 5.4e-152 541.2 321 81.3
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 7.1e-152 540.8 299 85.3
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.2e-151 540.0 315 80.3
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 5.1e-150 534.6 297 84.8
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 8.6e-150 533.9 309 80.3
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.8e-148 528.9 375 69.6
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.4e-147 525.8 305 81.0
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.4e-147 525.8 310 78.7
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.7e-145 519.6 298 80.2
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 2.2e-145 519.2 299 81.6
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.9e-145 518.8 298 81.2
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 3.2e-144 515.4 298 82.9
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 4.2e-144 515.0 321 77.3
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.3e-142 510.0 297 80.1
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.3e-142 509.2 318 77.4
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 3.3e-141 505.4 319 76.8
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.2e-140 503.4 299 78.6
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 3.1e-139 498.8 308 77.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.1e-139 498.8 320 71.6
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 9.0e-139 497.3 291 79.4
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 5.4e-136 488.0 313 72.8
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.0e-134 483.8 284 80.3
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.9e-134 481.9 270 84.4
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 4.3e-133 478.4 294 75.9
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.6e-133 478.0 313 74.4
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.6e-133 478.0 313 74.4
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.1e-131 473.8 314 73.6
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.1e-131 472.2 313 74.1
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 3.4e-130 468.8 314 69.1
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 4.9e-129 464.9 265 82.3
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 8.4e-129 464.2 308 69.2
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 6.0e-127 458.0 285 77.9
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 1.8e-126 456.4 254 83.9
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.5e-122 443.4 305 70.5
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 6.4e-121 438.0 254 80.3
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.5e-114 416.8 287 66.2
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.6e-114 416.0 299 70.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 4.5e-114 415.2 269 74.7
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 8.4e-113 411.0 258 77.9
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.3e-110 403.7 234 82.5
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.0e-110 402.5 317 59.3
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 3.8e-105 385.6 218 83.0
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.6e-103 380.2 315 58.1
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 5.0e-97 358.6 210 80.5
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.8e-89 332.4 306 52.6
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 8.5e-89 331.3 326 51.5
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.3e-76 288.5 204 65.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.6e-74 283.9 288 47.6
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.7e-74 283.1 179 74.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 3.8e-73 279.3 297 49.8
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 3.8e-73 279.3 170 78.8
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-67 261.2 165 73.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 4.1e-67 259.2 146 82.2
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 2.3e-65 253.4 170 71.8
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.5e-58 229.6 184 62.0
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.9e-57 226.5 132 78.8
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.6e-55 220.7 119 85.7
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 4.0e-54 216.1 169 63.9
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 1.7e-52 210.7 129 75.2
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 8.3e-52 208.4 118 81.4
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.3e-44 184.5 107 79.4
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 8.3e-44 181.8 110 79.1
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 6.6e-41 172.2 118 68.6
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.5e-40 171.0 124 67.7
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.4e-38 164.5 158 58.9
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 6.8e-38 162.2 105 70.5
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 6.6e-33 145.6 317 34.1
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.5e-32 143.7 108 63.9
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 4.0e-30 136.3 324 33.3
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 5.8e-29 132.5 73 86.3
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.0e-25 121.7 71 80.3
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.3e-24 116.7 119 52.9
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 3.4e-21 106.7 301 29.2
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 2.2e-20 104.0 69 71.0
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.8e-20 103.2 95 53.7
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 6.4e-20 102.4 69 71.0
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 1.3e-15 88.2 42 95.2
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 1.3e-15 88.2 42 95.2
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 1.8e-14 84.3 42 90.5
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.6e-13 80.5 287 26.1
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 1.3e-12 78.2 55 67.3
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.1e-11 75.1 291 25.4
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.4e-11 73.9 303 23.8
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.2e-11 73.6 165 27.9
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 5.4e-11 72.8 284 26.4
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 7.1e-11 72.4 52 63.5
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.3e-11 72.0 303 23.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.2e-10 71.6 256 27.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.6e-10 71.2 291 24.4
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.7e-10 70.5 291 26.1
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 7.9e-10 68.9 66 57.6
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 7.9e-10 68.9 242 27.3
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.0e-09 68.6 307 24.4
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 6.7e-09 65.9 218 28.4
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-08 64.7 289 24.2
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.5e-08 63.9 215 27.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-08 63.5 289 24.6
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 5.6e-08 62.8 289 24.6
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.4e-08 62.4 217 26.7
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.6e-08 62.0 289 24.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.6e-08 62.0 289 24.6
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 9.6e-08 62.0 303 24.8
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 3.7e-07 60.1 78 44.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.1e-06 58.5 206 26.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-06 57.0 206 26.7


User provided reference genes

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