Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 0.0e+00 1318.1 681 100.0
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 0.0e+00 1255.0 685 95.0
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 0.0e+00 1234.6 685 93.3
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 0.0e+00 1222.6 755 86.1
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 0.0e+00 1220.7 682 92.2
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 0.0e+00 1209.5 736 86.7
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 0.0e+00 1194.9 681 89.7
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 0.0e+00 1169.1 681 88.4
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 0.0e+00 1162.5 681 87.7
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 0.0e+00 1153.3 681 87.1
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 0.0e+00 1130.2 639 89.8
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 0.0e+00 1100.5 708 80.4
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 3.5e-286 988.0 714 71.0
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 8.0e-246 854.0 669 64.0
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.4e-245 853.2 666 63.4
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 1.8e-245 852.8 662 63.9
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.2e-244 850.1 499 88.0
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 2.0e-244 849.4 675 63.0
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 4.4e-244 848.2 658 64.3
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 3.5e-241 838.6 675 62.4
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 5.9e-241 837.8 653 62.6
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 5.9e-241 837.8 671 63.5
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 5.9e-241 837.8 650 63.8
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 7.7e-241 837.4 673 63.2
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.0e-240 837.0 671 62.0
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.3e-240 835.9 671 63.6
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.9e-240 835.5 668 62.9
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 5.0e-240 834.7 679 62.9
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 6.6e-240 834.3 673 63.0
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.5e-239 832.4 657 63.2
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.5e-239 832.4 671 62.4
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.2e-239 831.6 673 62.6
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 7.2e-239 830.9 657 62.4
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 9.5e-239 830.5 652 64.1
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.2e-238 830.1 675 61.9
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 1.6e-238 829.7 658 62.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 2.1e-238 829.3 673 62.3
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.0e-237 827.0 673 62.4
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 4.0e-237 825.1 669 62.6
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 5.2e-237 824.7 667 62.7
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.2e-236 823.5 676 60.5
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 3.4e-236 822.0 669 62.5
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 5.7e-236 821.2 676 61.4
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 7.5e-236 820.8 656 61.7
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 9.8e-236 820.5 649 63.6
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 9.8e-236 820.5 663 62.4
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 1.3e-235 820.1 704 59.4
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.7e-235 819.7 651 63.0
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 8.3e-235 817.4 660 61.4
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.1e-234 817.0 653 63.7
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.4e-234 816.6 679 60.2
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.0e-233 812.8 678 60.2
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 2.0e-233 812.8 649 62.6
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.7e-232 809.7 671 61.0
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 5.0e-232 808.1 669 60.5
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 8.6e-232 807.4 671 60.7
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 3.3e-231 805.4 650 62.5
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.3e-229 799.3 676 59.9
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 7.5e-228 794.3 654 61.0
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 2.2e-227 792.7 699 57.7
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 2.9e-227 792.3 674 60.5
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 2.9e-227 792.3 684 59.5
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.4e-226 789.3 741 56.7
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 7.0e-226 787.7 668 58.8
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.7e-225 785.8 675 59.9
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 6.0e-225 784.6 659 60.4
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 4.7e-222 775.0 671 58.3
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 6.8e-221 771.2 670 58.8
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 8.9e-221 770.8 675 57.5
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.2e-220 770.4 638 61.4
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.7e-219 766.5 669 58.1
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 8.3e-219 764.2 671 57.5
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.3e-216 756.9 658 58.2
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.1e-215 753.8 738 53.5
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.9e-215 753.1 675 58.2
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 3.6e-214 748.8 586 64.0
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 6.8e-213 744.6 701 56.5
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.0e-212 743.0 585 63.2
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.7e-211 738.8 662 57.9
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 3.5e-209 732.3 653 57.7
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.3e-208 730.3 669 57.1
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.3e-208 730.3 563 66.3
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 2.5e-207 726.1 652 59.4
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.6e-201 705.3 657 54.9
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 1.0e-200 704.1 578 60.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.3e-200 703.7 585 61.9
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 1.5e-199 700.3 699 53.4
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 3.6e-198 695.7 644 55.7
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 2.4e-197 693.0 671 54.7
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 6.9e-197 691.4 673 54.5
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.2e-196 690.6 708 53.0
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.2e-193 680.6 673 52.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.7e-193 679.5 677 52.6
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.1e-189 666.0 671 52.0
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-184 650.6 675 52.3
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 5.1e-184 648.7 520 63.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.1e-178 630.9 622 53.4
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 5.3e-173 612.1 669 51.6
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.7e-161 573.2 600 51.7
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 4.5e-156 555.8 671 44.7
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.3e-150 537.7 654 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.6e-132 477.6 717 39.5
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.1e-125 454.9 358 65.4
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.0e-119 434.1 593 44.2
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 2.3e-107 394.0 326 61.7
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 4.8e-81 306.6 398 47.0
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.3e-80 303.1 186 82.3
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 2.6e-79 300.8 306 50.3
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 9.3e-77 292.4 361 47.6
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.4e-72 278.5 668 31.0
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.2e-68 265.4 237 59.1
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 4.9e-62 243.4 336 43.5
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 2.7e-44 184.5 331 33.2
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.0e-38 166.0 315 33.7
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 6.5e-38 163.3 734 25.6
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 2.8e-33 147.9 123 58.5
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 4.2e-29 134.0 183 43.2
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.5e-26 125.6 122 52.5
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 8.2e-25 119.8 116 56.9
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.3e-22 112.5 95 61.1
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.5e-21 108.2 62 87.1
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.5e-21 108.2 62 87.1
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 5.2e-19 100.5 95 56.8
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.0e-14 86.3 70 60.0
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.7e-12 77.4 80 43.8
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 4.4e-10 70.9 50 60.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-09 69.3 46 63.0
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.7e-09 68.9 103 37.9
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.7e-09 67.8 42 71.4
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.7e-09 67.8 46 60.9
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 8.3e-09 66.6 42 69.0
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 1.1e-08 66.2 84 46.4
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-08 65.1 46 60.9
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 5.4e-08 63.9 38 73.7
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 7.8e-07 60.1 42 66.7


User provided reference genes

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