Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09207 Brassica carinata HOM05D000281 ORTHO05D032728 1.4e-27 125.6 62 100.0
C04p40060 Brassica napus HOM05D000281 ORTHO05D032728 1.7e-22 108.6 53 98.1
BolC4t25581H Brassica oleracea HOM05D000281 ORTHO05D032728 1.7e-22 108.6 53 98.1
A07p30980 Brassica napus HOM05D000281 ORTHO05D000290 5.0e-22 107.1 53 96.2
C06p35980 Brassica napus HOM05D000281 ORTHO05D000290 5.0e-22 107.1 53 96.2
BolC6t38718H Brassica oleracea HOM05D000281 ORTHO05D000290 5.0e-22 107.1 53 96.2
BraA07t30734Z Brassica rapa HOM05D000281 ORTHO05D000290 5.0e-22 107.1 53 96.2
BcaC08g45805 Brassica carinata HOM05D000281 ORTHO05D000290 1.5e-21 105.5 53 94.3
BcaB03g15555 Brassica carinata HOM05D000281 ORTHO05D000290 2.8e-20 101.3 53 90.6
BcaC03g15226 Brassica carinata HOM05D000281 ORTHO05D000290 1.0e-19 99.4 53 86.8
A02p16830 Brassica napus HOM05D000281 ORTHO05D000290 1.0e-19 99.4 53 86.8
C02p28090 Brassica napus HOM05D000281 ORTHO05D000290 1.0e-19 99.4 53 86.8
BolC2t08853H Brassica oleracea HOM05D000281 ORTHO05D000290 1.0e-19 99.4 53 86.8
BraA02t06737Z Brassica rapa HOM05D000281 ORTHO05D000290 1.0e-19 99.4 53 86.8
BcaB05g24606 Brassica carinata HOM05D000281 ORTHO05D000290 1.4e-19 99.0 53 86.8
Sp5g25900 Schrenkiella parvula HOM05D000281 ORTHO05D000290 3.1e-19 97.8 53 86.8
Thhalv10019136m.g Eutrema salsugineum HOM05D000281 ORTHO05D000290 2.2e-17 91.7 53 84.9
AL2G30160 Arabidopsis lyrata HOM05D000281 ORTHO05D000290 3.7e-17 90.9 54 81.5
BcaB05g24607 Brassica carinata HOM05D000281 ORTHO05D000290 3.7e-17 90.9 53 83.0
Carub.0002s1746 Capsella rubella HOM05D000281 ORTHO05D000290 1.9e-16 88.6 55 80.0
AT1G70720 Arabidopsis thaliana HOM05D000281 ORTHO05D000290 1.2e-15 85.9 54 75.9
CARHR063980 Cardamine hirsuta HOM05D000281 ORTHO05D000290 2.7e-15 84.7 55 78.2
AL1G36920 Arabidopsis lyrata HOM05D000281 ORTHO05D000290 7.3e-13 76.6 53 69.8
AT1G23205 Arabidopsis thaliana HOM05D000281 ORTHO05D000290 7.3e-13 76.6 53 69.8
Carub.0001s2279 Capsella rubella HOM05D000281 ORTHO05D000290 7.3e-13 76.6 47 72.3
BcaB03g14158 Brassica carinata HOM05D000281 ORTHO05D000290 2.1e-12 75.1 47 70.2
Thhalv10008638m.g Eutrema salsugineum HOM05D000281 ORTHO05D000290 3.6e-12 74.3 53 67.9
Sp1g20670 Schrenkiella parvula HOM05D000281 ORTHO05D000290 1.1e-11 72.8 47 70.2
A07p13960 Brassica napus HOM05D000281 ORTHO05D000290 1.8e-11 72.0 47 68.1
C07p20510 Brassica napus HOM05D000281 ORTHO05D000290 1.8e-11 72.0 47 68.1
BolC7t42577H Brassica oleracea HOM05D000281 ORTHO05D000290 1.8e-11 72.0 47 68.1
BraA07t29152Z Brassica rapa HOM05D000281 ORTHO05D000290 1.8e-11 72.0 47 68.1
BcaC06g35027 Brassica carinata HOM05D000281 ORTHO05D000290 2.3e-11 71.6 47 68.1
CARHR023660 Cardamine hirsuta HOM05D000281 ORTHO05D000290 4.0e-11 70.9 53 64.2
Aa31LG4G10260 Aethionema arabicum HOM05D000281 ORTHO05D000290 5.2e-11 70.5 52 69.2
BcaB07g32310 Brassica carinata HOM05D000281 ORTHO05D000290 6.8e-11 70.1 47 66.0
BcaC05g26228 Brassica carinata HOM05D000281 ORTHO05D000290 1.3e-09 65.9 43 65.1
BcaC05g26229 Brassica carinata HOM05D000281 ORTHO05D000290 1.3e-09 65.9 43 65.1
C05p22410 Brassica napus HOM05D000281 ORTHO05D000290 1.3e-09 65.9 43 65.1
BolC5t30940H Brassica oleracea HOM05D000281 ORTHO05D000290 1.3e-09 65.9 43 65.1
Cc11_g08170 Coffea canephora HOM05D000281 ORTHO05D000290 2.2e-09 65.1 55 58.2
MD00G1133700 Malus domestica HOM05D000281 ORTHO05D000290 2.9e-09 64.7 64 54.7
THA.LOC104822995 Tarenaya hassleriana HOM05D000281 ORTHO05D000290 8.3e-09 63.2 48 64.6
A09p41560 Brassica napus HOM05D000281 ORTHO05D000290 1.1e-08 62.8 43 62.8
BraA09t39647Z Brassica rapa HOM05D000281 ORTHO05D000290 1.1e-08 62.8 43 62.8
Aa31LG7G7220 Aethionema arabicum HOM05D000281 ORTHO05D000290 1.4e-08 62.4 48 64.6
CARHR144180 Cardamine hirsuta HOM05D000281 ORTHO05D000290 1.4e-08 62.4 40 70.0
Cpa.g.c25723.3 Carica papaya HOM05D000281 ORTHO05D000290 1.4e-08 62.4 53 60.4
Haze_10928 Corylus avellana HOM05D000281 ORTHO05D000290 1.9e-08 62.0 53 58.5
Carub.0005s0056 Capsella rubella HOM05D000281 ORTHO05D000290 4.1e-08 60.8 40 67.5
MD16G1021700 Malus domestica HOM05D000281 ORTHO05D000290 4.1e-08 60.8 64 53.1
Manes.17G081300 Manihot esculenta HOM05D000281 ORTHO05D000290 4.1e-08 60.8 65 50.8
Cfa014989 Carpinus fangiana HOM05D000281 ORTHO05D000290 5.4e-08 60.5 53 56.6
COL.COLO4_13091 Corchorus olitorius HOM05D000281 ORTHO05D000290 5.4e-08 60.5 53 58.5
AL5G10710 Arabidopsis lyrata HOM05D000281 ORTHO05D000290 7.1e-08 60.1 58 50.0
AT2G01610 Arabidopsis thaliana HOM05D000281 ORTHO05D000290 7.1e-08 60.1 58 50.0
Eucgr.B02943 Eucalyptus grandis HOM05D000281 ORTHO05D000290 7.1e-08 60.1 55 56.4
Atru.chr11.610 Acer truncatum HOM05D000281 ORTHO05D000290 9.2e-08 59.7 65 47.7
Atru.chr6.838 Acer truncatum HOM05D000281 ORTHO05D000290 1.2e-07 59.3 65 47.7
Actinidia12378 Actinidia chinensis HOM05D000281 ORTHO05D000290 1.2e-07 59.3 52 57.7
Nitab4.5_0000573g0060 Nicotiana tabacum HOM05D000281 ORTHO05D000290 1.2e-07 59.3 53 56.6
Thecc.02G288500 Theobroma cacao HOM05D000281 ORTHO05D000290 1.2e-07 59.3 53 56.6
Duzib251G0843 Durio zibethinus HOM05D000281 ORTHO05D000290 1.6e-07 58.9 43 62.8
Eucgr.G02156 Eucalyptus grandis HOM05D000281 ORTHO05D000290 1.6e-07 58.9 52 57.7
Oeu034250.1 Olea europaea HOM05D000281 ORTHO05D000290 1.6e-07 58.9 53 58.5
Oeu034253.1 Olea europaea HOM05D000281 ORTHO05D000290 1.6e-07 58.9 53 58.5
Gohir.A03G119300 Gossypium hirsutum HOM05D000281 ORTHO05D000290 2.1e-07 58.5 46 58.7
Manes.15G132300 Manihot esculenta HOM05D000281 ORTHO05D000290 2.1e-07 58.5 65 49.2
Nitab4.5_0001187g0120 Nicotiana tabacum HOM05D000281 ORTHO05D000290 2.1e-07 58.5 51 56.9
QL03p034089 Quercus lobata HOM05D000281 ORTHO05D000290 2.1e-07 58.5 54 59.3
Sopen10g028360 Solanum pennellii HOM05D000281 ORTHO05D000290 2.1e-07 58.5 53 54.7
Ciclev10016684m.g Citrus clementina HOM05D000281 ORTHO05D000290 2.7e-07 58.2 54 55.6
Potri.008G132600 Populus trichocarpa HOM05D000281 ORTHO05D000290 2.7e-07 58.2 54 53.7
Sabra10G0079800 Salix brachista HOM05D000281 ORTHO05D000290 2.7e-07 58.2 52 55.8
Solyc10g076730.1 Solanum lycopersicum HOM05D000281 ORTHO05D000290 2.7e-07 58.2 53 54.7
CiPaw.05G191700 Carya illinoinensis HOM05D000281 ORTHO05D000290 3.5e-07 57.8 53 52.8
Dinv28055 Davidia involucrata HOM05D000281 ORTHO05D000290 3.5e-07 57.8 51 58.8
Duzib268G1482 Durio zibethinus HOM05D000281 ORTHO05D000290 3.5e-07 57.8 46 58.7
ECA234G2818 Erigeron canadensis HOM05D000281 ORTHO05D000290 3.5e-07 57.8 47 59.6
PGR142G1809 Punica granatum HOM05D000281 ORTHO05D000290 3.5e-07 57.8 58 55.2
Gohir.D12G155100 Gossypium hirsutum HOM05D000281 ORTHO05D000290 4.6e-07 57.4 53 52.8
Gorai.008G167500 Gossypium raimondii HOM05D000281 ORTHO05D000290 4.6e-07 57.4 53 52.8
Oeu063584.1 Olea europaea HOM05D000281 ORTHO05D000290 4.6e-07 57.4 53 56.6
PGSC0003DMG400019123 Solanum tuberosum HOM05D000281 ORTHO05D000290 4.6e-07 57.4 53 54.7
Gohir.A12G151400 Gossypium hirsutum HOM05D000281 ORTHO05D000290 6.0e-07 57.0 53 52.8
Gohir.D02G142700 Gossypium hirsutum HOM05D000281 ORTHO05D000290 6.0e-07 57.0 43 60.5
Gorai.005G160200 Gossypium raimondii HOM05D000281 ORTHO05D000290 6.0e-07 57.0 43 60.5
Lsat_1_v5_gn_4_13401 Lactuca sativa HOM05D000281 ORTHO05D000290 6.0e-07 57.0 53 54.7
Lsat_1_v5_gn_8_45140 Lactuca sativa HOM05D000281 ORTHO05D000290 6.0e-07 57.0 51 58.8
ECA233G2210 Erigeron canadensis HOM05D000281 ORTHO05D000290 7.8e-07 56.6 52 53.8
HanXRQChr16g0529901 Helianthus annuus HOM05D000281 ORTHO05D000290 7.8e-07 56.6 43 65.1
Peaxi162Scf00034g00202 Petunia axillaris HOM05D000281 ORTHO05D000290 7.8e-07 56.6 47 57.4
Potri.010G109300 Populus trichocarpa HOM05D000281 ORTHO05D000290 7.8e-07 56.6 54 51.9
Gohir.D01G142600 Gossypium hirsutum HOM05D000281 ORTHO05D000290 1.0e-06 56.2 46 56.5
Gorai.002G175900 Gossypium raimondii HOM05D000281 ORTHO05D000290 1.0e-06 56.2 46 56.5
Lalb_Chr16g0387781 Lupinus albus HOM05D000281 ORTHO05D000290 1.0e-06 56.2 52 51.9
Peaxi162Scf00191g10112 Petunia axillaris HOM05D000281 ORTHO05D007047 1.0e-06 56.2 52 53.8
TPR.G32711 Trifolium pratense HOM05D000281 ORTHO05D000290 1.0e-06 56.2 47 57.4
CiPaw.06G049400 Carya illinoinensis HOM05D000281 ORTHO05D000290 1.3e-06 55.8 53 50.9
DCAR_007318 Daucus carota HOM05D000281 ORTHO05D000290 1.3e-06 55.8 55 56.4
Glyma.05G236600 Glycine max HOM05D000281 ORTHO05D000290 1.3e-06 55.8 47 57.4
Gohir.A01G145318 Gossypium hirsutum HOM05D000281 ORTHO05D000290 1.3e-06 55.8 46 54.3
Lsat_1_v5_gn_8_45201 Lactuca sativa HOM05D000281 ORTHO05D000290 1.7e-06 55.5 51 60.8
SalBow2G1228 Salvia bowleyana HOM05D000281 ORTHO05D000290 1.7e-06 55.5 53 56.6
Sp2g13060 Schrenkiella parvula HOM05D000281 ORTHO05D000290 1.7e-06 55.5 40 62.5
TWI74G0981 Tripterygium wilfordii HOM05D000281 ORTHO05D000290 1.7e-06 55.5 52 48.1
TWI74G1474 Tripterygium wilfordii HOM05D000281 ORTHO05D000290 1.7e-06 55.5 52 48.1
Ah.09g234300 Amaranthus hybridus HOM05D000281 ORTHO05D000290 2.3e-06 55.1 49 55.1
Ca_17298_v3 Cicer arietinum L. HOM05D000281 ORTHO05D000290 2.3e-06 55.1 44 59.1
Ca_17305_v3 Cicer arietinum L. HOM05D000281 ORTHO05D000290 2.3e-06 55.1 44 59.1
Dinv18625 Davidia involucrata HOM05D000281 ORTHO05D000290 2.3e-06 55.1 55 52.7
Dinv26241 Davidia involucrata HOM05D000281 ORTHO05D000290 2.3e-06 55.1 55 52.7
Nitab4.5_0004546g0050 Nicotiana tabacum HOM05D000281 ORTHO05D000290 2.3e-06 55.1 53 54.7
MSTRG.2146 Avicennia marina HOM05D000281 ORTHO05D000290 3.0e-06 54.7 53 54.7
AUR62039539 Chenopodium quinoa HOM05D000281 ORTHO05D000290 3.0e-06 54.7 43 55.8
MELO3C005291.2 Cucumis melo HOM05D000281 ORTHO05D000290 3.0e-06 54.7 53 50.9
CsaV3_5G028280 Cucumis sativus L. HOM05D000281 ORTHO05D000290 3.0e-06 54.7 53 50.9
HanXRQChr12g0363461 Helianthus annuus HOM05D000281 ORTHO05D000290 3.9e-06 54.3 45 60.0
Rhsim09G0092900 Rhododendron simsii HOM05D000281 ORTHO05D000290 3.9e-06 54.3 53 52.8
RhsimUnG0026500 Rhododendron simsii HOM05D000281 ORTHO05D000290 3.9e-06 54.3 53 52.8
RcHm_v2.0_Chr4g0443491 Rosa chinensis HOM05D000281 ORTHO05D000290 3.9e-06 54.3 54 57.4
Sabra08G0101300 Salix brachista HOM05D000281 ORTHO05D000290 3.9e-06 54.3 54 51.9
Sed0024962 Sechium edule HOM05D000281 ORTHO05D000290 3.9e-06 54.3 51 52.9
MSTRG.13611 Avicennia marina HOM05D000281 ORTHO05D000290 5.1e-06 53.9 46 56.5
BcaC05g25419 Brassica carinata HOM05D000281 ORTHO05D000290 5.1e-06 53.9 37 64.9
A06p10940 Brassica napus HOM05D000281 ORTHO05D000290 5.1e-06 53.9 37 64.9
C05p12940 Brassica napus HOM05D000281 ORTHO05D000290 5.1e-06 53.9 37 64.9
BolC5t30041H Brassica oleracea HOM05D000281 ORTHO05D000290 5.1e-06 53.9 37 64.9
CSS0033953 Camellia sinensis var. sinensis HOM05D000281 ORTHO05D000290 5.1e-06 53.9 51 56.9
CANSAT01G1338 Cannabis sativa HOM05D000281 ORTHO05D000290 5.1e-06 53.9 49 51.0
Glyma.08G043800 Glycine max HOM05D000281 ORTHO05D000290 5.1e-06 53.9 47 53.2
Nitab4.5_0000621g0120 Nicotiana tabacum HOM05D000281 ORTHO05D000290 5.1e-06 53.9 53 54.7
TAR629G2022 Trochodendron aralioides HOM05D000281 ORTHO05D000290 5.1e-06 53.9 60 53.3
ATR0564G060 Amborella trichopoda HOM05D000281 ORTHO05D000290 6.6e-06 53.5 49 57.1
AUR62014169 Chenopodium quinoa HOM05D000009 ORTHO05D000290 6.6e-06 53.5 43 51.2
TWI77G0101 Tripterygium wilfordii HOM05D000281 ORTHO05D000290 6.6e-06 53.5 43 58.1
Aqoxy3G04082 Aquilegia oxysepala HOM05D000281 ORTHO05D000290 8.6e-06 53.1 52 51.9
Lalb_Chr05g0222341 Lupinus albus HOM05D000281 ORTHO05D000290 8.6e-06 53.1 46 54.3
Medtr4g120825 Medicago truncatula HOM05D000281 ORTHO05D000290 8.6e-06 53.1 51 49.0
Medtr4g120830 Medicago truncatula HOM05D000281 ORTHO05D000290 8.6e-06 53.1 51 49.0
Medtr8g104765 Medicago truncatula HOM05D000281 ORTHO05D000290 8.6e-06 53.1 51 49.0
Nn4g24278 Nelumbo nucifera HOM05D000281 ORTHO05D000290 8.6e-06 53.1 52 51.9
Peaxi162Scf00376g00210 Petunia axillaris HOM05D000281 ORTHO05D000290 8.6e-06 53.1 53 52.8


User provided reference genes

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