Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09162 Brassica carinata HOM05D000370 ORTHO05D032448 1.5e-59 232.6 119 100.0
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 7.1e-49 197.2 102 100.0
BolC2t09732H Brassica oleracea HOM05D000370 ORTHO05D032448 7.6e-27 124.0 63 100.0
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 6.7e-23 110.9 57 98.2
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 6.7e-23 110.9 57 98.2
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 6.7e-23 110.9 57 98.2
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 6.7e-23 110.9 57 98.2
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 8.7e-23 110.5 57 96.5
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 2.5e-22 109.0 57 96.5
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 3.3e-22 108.6 57 96.5
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 7.4e-22 107.5 57 93.0
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 9.7e-22 107.1 57 94.7
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 1.3e-21 106.7 57 93.0
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 2.2e-21 105.9 57 93.0
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 2.2e-21 105.9 57 93.0
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 2.2e-21 105.9 57 93.0
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 2.8e-21 105.5 57 91.2
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 3.7e-21 105.1 57 89.5
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 2.6e-19 99.0 59 78.0
BcaC05g29217 Brassica carinata HOM05D000370 ORTHO05D006313 4.5e-19 98.2 57 87.7
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 4.5e-19 98.2 57 87.7
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 4.5e-19 98.2 57 87.7
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 1.3e-18 96.7 59 78.0
Hma1.2p1_0145F.1_g065160 Hydrangea macrophylla HOM05D000370 ORTHO05D032448 1.7e-18 96.3 57 84.2
Hma1.2p1_1098F.1_g256740 Hydrangea macrophylla HOM05D000370 ORTHO05D006313 1.7e-18 96.3 57 84.2
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 1.7e-18 96.3 57 80.7
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 2.9e-18 95.5 56 85.7
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 3.8e-18 95.1 57 82.5
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 5.0e-18 94.7 59 76.3
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 8.5e-18 94.0 57 77.2
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 8.5e-18 94.0 57 78.9
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 8.5e-18 94.0 59 76.3
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 8.5e-18 94.0 59 78.0
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 1.1e-17 93.6 57 78.9
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 1.4e-17 93.2 57 77.2
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 1.4e-17 93.2 57 77.2
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 1.4e-17 93.2 57 77.2
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 1.4e-17 93.2 57 78.9
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 1.4e-17 93.2 57 77.2
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 1.4e-17 93.2 56 82.1
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.9e-17 92.8 57 77.2
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 1.9e-17 92.8 59 72.9
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 1.9e-17 92.8 59 72.9
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 4.2e-17 91.7 59 76.3
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 4.2e-17 91.7 57 78.9
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 4.2e-17 91.7 57 78.9
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 4.2e-17 91.7 57 78.9
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 4.2e-17 91.7 57 78.9
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 7.2e-17 90.9 57 73.7
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 7.2e-17 90.9 57 78.9
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 7.2e-17 90.9 57 78.9
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 9.4e-17 90.5 57 78.9
Cpa.g.sc1036.2 Carica papaya HOM05D000370 ORTHO05D006313 1.6e-16 89.7 59 72.9
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 1.6e-16 89.7 59 71.2
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.1e-16 89.4 57 77.2
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 2.1e-16 89.4 57 75.4
Ciclev10028485m.g Citrus clementina HOM05D000370 ORTHO05D006313 2.7e-16 89.0 57 75.4
GSVIVG01029449001 Vitis vinifera HOM05D000370 ORTHO05D006313 2.7e-16 89.0 57 77.2
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 3.6e-16 88.6 57 73.7
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 3.6e-16 88.6 57 73.7
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 4.6e-16 88.2 57 73.7
COL.COLO4_26817 Corchorus olitorius HOM05D000370 ORTHO05D006313 6.1e-16 87.8 68 63.2
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 7.9e-16 87.4 57 75.4
Sp1g14900 Schrenkiella parvula HOM05D000370 ORTHO05D006313 1.4e-15 86.7 57 75.4
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 1.8e-15 86.3 57 73.7
vmacro18723 Vaccinium macrocarpon HOM05D000370 ORTHO05D006313 1.8e-15 86.3 57 75.4
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 2.3e-15 85.9 59 71.2
Aa31LG7G1210 Aethionema arabicum HOM05D000370 ORTHO05D006313 2.3e-15 85.9 57 71.9
Rhsim08G0252100 Rhododendron simsii HOM05D000370 ORTHO05D006313 2.3e-15 85.9 57 73.7
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 3.0e-15 85.5 57 75.4
A08p31290 Brassica napus HOM05D000370 ORTHO05D006313 3.0e-15 85.5 57 75.4
C08p17540 Brassica napus HOM05D000370 ORTHO05D006313 3.0e-15 85.5 57 75.4
BolC8t49380H Brassica oleracea HOM05D000370 ORTHO05D006313 3.0e-15 85.5 57 75.4
BraA08t35052Z Brassica rapa HOM05D000370 ORTHO05D006313 3.0e-15 85.5 57 75.4
MBI13_g08746_MAGBIO Magnolia biondii HOM05D001253 ORTHO05D001086 3.0e-15 85.5 56 73.2
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 3.0e-15 85.5 58 67.2
Aqoxy7G02562 Aquilegia oxysepala HOM05D000370 ORTHO05D006313 3.9e-15 85.1 56 75.0
BcaC07g38812 Brassica carinata HOM05D000370 ORTHO05D006313 3.9e-15 85.1 57 75.4
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 3.9e-15 85.1 57 75.4
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 3.9e-15 85.1 57 71.9
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 2.0e-14 82.8 54 72.2
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 2.0e-14 82.8 57 71.9
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 2.0e-14 82.8 56 69.6
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 2.0e-14 82.8 56 69.6
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 4.3e-14 81.6 57 73.7
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 1.3e-13 80.1 57 71.9
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 1.3e-13 80.1 53 69.8
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 1.3e-13 80.1 53 69.8
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 1.7e-13 79.7 54 68.5
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 1.7e-13 79.7 57 70.2
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 2.2e-13 79.3 54 68.5
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 2.8e-13 79.0 57 71.9
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 2.8e-13 79.0 57 68.4
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 2.8e-13 79.0 57 68.4
ATR0006G062 Amborella trichopoda HOM05D000370 ORTHO05D006313 3.7e-13 78.6 54 66.7
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 3.7e-13 78.6 66 60.6
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 1.8e-12 76.3 54 70.4
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 9.1e-12 73.9 54 68.5
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 2.0e-11 72.8 54 66.7
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 3.4e-11 72.0 57 56.1
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 4.5e-11 71.6 44 81.8
Os02g0153000 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.3e-10 70.1 57 54.4
Cpa.g.sc82.38 Carica papaya HOM05D000370 ORTHO05D006313 2.9e-10 68.9 54 61.1
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 3.8e-10 68.6 54 70.4
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 6.5e-10 67.8 54 63.0
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 1.1e-09 67.0 48 75.0
Zm00001eb225950 Zea mays HOM05D000370 ORTHO05D006313 1.1e-09 67.0 57 54.4
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 1.1e-09 67.0 57 54.4
Thecc.09G067700 Theobroma cacao HOM05D000370 ORTHO05D006313 2.5e-09 65.9 54 63.0
Duzib187G1680 Durio zibethinus HOM05D000370 ORTHO05D006313 5.5e-09 64.7 54 57.4
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 1.2e-08 63.5 54 57.4
COL.COLO4_21180 Corchorus olitorius HOM05D000370 ORTHO05D006313 2.1e-08 62.8 54 59.3
Pp3c1_28560 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.7e-08 62.4 68 48.5
MBI05_g10672_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 7.9e-08 60.8 51 64.7
SMO361G0174 Selaginella moellendorffii HOM05D000370 ORTHO05D006313 7.9e-08 60.8 54 53.7
Gohir.A05G037200 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.4e-07 60.1 54 55.6
Gohir.D05G038700 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.8e-07 59.7 54 53.7
Gorai.009G039200 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.8e-07 59.7 54 53.7
Gohir.A07G018100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 3.0e-07 58.9 54 53.7
Gorai.001G018600 Gossypium raimondii HOM05D000370 ORTHO05D006313 3.0e-07 58.9 54 53.7
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 3.0e-07 58.9 64 46.9
Pp3c2_7590 Physcomitrium patens HOM05D000370 ORTHO05D006313 3.9e-07 58.5 68 45.6
Pp3c2_7596 Physcomitrium patens HOM05D000370 ORTHO05D006313 3.9e-07 58.5 68 45.6
Pp3c14_19250 Physcomitrium patens HOM05D000370 ORTHO05D006313 8.8e-07 57.4 69 44.9
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 1.1e-06 57.0 54 57.4
Gohir.A01G181000 Gossypium hirsutum HOM05D000370 ORTHO05D001335 1.5e-06 56.6 46 60.9
Gorai.002G213700 Gossypium raimondii HOM05D000370 ORTHO05D001335 1.5e-06 56.6 46 60.9
CsaV3_7G010180 Cucumis sativus L. HOM05D000370 ORTHO05D001335 2.6e-06 55.8 100 40.0
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 2.6e-06 55.8 57 47.4
Mapoly0019s0124 Marchantia polymorpha HOM05D000370 ORTHO05D006313 3.3e-06 55.5 56 55.4
SMO270G0082 Selaginella moellendorffii HOM05D000370 ORTHO05D006313 3.3e-06 55.5 54 51.9
ClCG02G005380 Citrullus lanatus HOM05D000370 ORTHO05D001335 4.4e-06 55.1 62 50.0
Gohir.D01G172100 Gossypium hirsutum HOM05D000370 ORTHO05D001335 4.4e-06 55.1 46 58.7
Os09g0463300 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D001366 4.4e-06 55.1 43 58.1
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 4.4e-06 55.1 57 47.4
A04p18090 Brassica napus HOM05D000370 ORTHO05D001335 5.7e-06 54.7 54 46.3
BraA04t17427Z Brassica rapa HOM05D000370 ORTHO05D001335 5.7e-06 54.7 54 46.3
THA.LOC104819210 Tarenaya hassleriana HOM05D000370 ORTHO05D001335 5.7e-06 54.7 75 42.7
A09p09900 Brassica napus HOM05D000370 ORTHO05D001335 7.4e-06 54.3 54 48.1
C01p02070 Brassica napus HOM05D000370 ORTHO05D001366 7.4e-06 54.3 61 47.5
C04p53040 Brassica napus HOM05D000370 ORTHO05D001335 7.4e-06 54.3 54 46.3
BolC4t26864H Brassica oleracea HOM05D000370 ORTHO05D001335 7.4e-06 54.3 54 46.3
BraA09t36637Z Brassica rapa HOM05D000370 ORTHO05D001335 7.4e-06 54.3 54 48.1
Thhalv10000068m.g Eutrema salsugineum HOM05D000370 ORTHO05D001335 7.4e-06 54.3 54 46.3
Gohir.D07G017900 Gossypium hirsutum HOM05D000370 ORTHO05D006313 7.4e-06 54.3 46 56.5
Sp4g02660 Schrenkiella parvula HOM05D000370 ORTHO05D001335 7.4e-06 54.3 54 46.3
Carub.0004s0291 Capsella rubella HOM05D000370 ORTHO05D001335 9.7e-06 53.9 54 46.3
Pp3c2_32020 Physcomitrium patens HOM05D000370 ORTHO05D001335 9.7e-06 53.9 56 48.2
SGA_v2.0_scaffold15G07186 Striga asiatica HOM05D000370 ORTHO05D001335 9.7e-06 53.9 52 51.9
THA.LOC104819817 Tarenaya hassleriana HOM05D000370 ORTHO05D001335 9.7e-06 53.9 51 51.0


User provided reference genes

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