Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-122 443.4 224 100.0
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.7e-118 428.7 225 95.6
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 7.9e-118 427.2 225 95.6
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 3.5e-105 385.2 225 90.7
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 5.9e-105 384.4 225 90.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.4e-93 346.7 226 72.6
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.3e-93 345.9 226 72.6
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.0e-93 345.5 226 71.2
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.2e-92 343.6 226 74.3
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.5e-92 343.2 226 73.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-91 338.6 226 71.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 6.3e-91 337.8 226 71.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 6.3e-91 337.8 226 71.2
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.1e-90 335.5 226 69.5
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.1e-90 335.1 226 70.8
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 5.4e-90 334.7 226 70.8
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.7e-80 303.1 226 66.8
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.6e-71 271.6 195 66.2
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 8.1e-70 267.7 160 80.0
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 8.9e-69 264.2 217 60.8
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.1e-57 226.5 223 51.6
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.6e-54 216.9 209 53.1
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.9e-53 211.1 196 53.6
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.5e-52 210.3 205 49.3
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 4.4e-52 208.8 222 48.6
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.8e-52 208.4 210 48.6
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-51 206.8 214 50.5
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.7e-51 206.8 224 49.6
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.7e-51 206.8 211 50.2
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.9e-51 205.3 198 51.5
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 8.4e-51 204.5 205 48.8
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 8.4e-51 204.5 224 47.8
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.2e-50 202.2 189 51.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.4e-50 201.8 210 50.0
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 7.1e-50 201.4 213 47.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 9.3e-50 201.1 214 48.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.7e-49 199.5 218 47.2
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 4.6e-49 198.7 229 47.2
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.0e-48 197.6 205 50.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-48 197.2 237 44.3
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.3e-48 196.4 219 46.6
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 3.0e-48 196.1 214 48.6
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 3.0e-48 196.1 211 48.8
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 3.9e-48 195.7 215 46.0
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.9e-48 195.7 205 48.8
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 5.1e-48 195.3 219 52.5
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 6.6e-48 194.9 208 47.6
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 8.7e-48 194.5 206 47.6
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.7e-48 194.5 208 51.4
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 8.7e-48 194.5 221 45.7
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.5e-47 193.7 199 51.8
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.5e-47 193.7 227 46.3
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.9e-47 193.4 202 47.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.9e-47 193.4 249 41.4
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.5e-47 193.0 216 46.3
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.3e-47 192.2 209 48.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.3e-47 192.2 210 47.1
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 4.3e-47 192.2 224 47.8
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 4.3e-47 192.2 213 49.8
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.6e-47 191.0 233 49.4
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 9.6e-47 191.0 213 52.6
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.3e-46 190.7 213 47.9
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.3e-46 190.7 214 47.7
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.6e-46 190.3 209 47.4
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.6e-46 190.3 218 45.9
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.1e-46 189.9 209 48.3
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.1e-46 189.9 214 48.6
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.1e-46 189.9 211 47.9
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.8e-46 189.5 209 45.9
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.6e-46 189.1 235 45.1
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 3.6e-46 189.1 190 47.9
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 4.8e-46 188.7 203 47.3
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 4.8e-46 188.7 195 48.7
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.8e-46 188.7 211 47.4
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.8e-46 188.7 212 46.7
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 6.2e-46 188.3 212 45.8
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 6.2e-46 188.3 229 48.9
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 8.1e-46 188.0 221 44.3
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.1e-46 188.0 206 47.1
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.1e-45 187.6 188 49.5
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.1e-45 187.6 224 46.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.1e-45 187.6 209 52.2
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.4e-45 187.2 215 51.2
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.4e-45 187.2 268 39.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 1.8e-45 186.8 190 48.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-45 186.8 221 47.1
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.8e-45 186.8 230 47.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.4e-45 186.4 235 48.1
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 5.3e-45 185.3 210 49.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 5.3e-45 185.3 209 45.5
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.3e-45 185.3 228 48.2
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.9e-45 184.9 204 45.6
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.2e-44 184.1 219 44.7
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.5e-44 183.7 204 46.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.0e-44 183.3 196 49.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.0e-44 183.3 204 47.1
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.6e-44 183.0 218 49.5
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 3.4e-44 182.6 219 44.3
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 4.4e-44 182.2 212 44.8
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 9.9e-44 181.0 215 49.8
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.3e-43 180.6 216 43.5
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.3e-43 180.6 204 46.6
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.7e-43 180.3 212 45.8
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.2e-43 179.9 245 41.6
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.2e-43 179.9 245 43.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.2e-43 179.9 228 43.4
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.9e-43 178.7 217 42.9
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.9e-43 178.7 212 42.9
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 4.9e-43 178.7 205 46.8
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 4.9e-43 178.7 215 49.8
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.9e-43 178.7 215 49.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 8.4e-43 177.9 213 44.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.1e-42 177.6 206 45.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-42 177.2 217 43.3
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-42 177.2 205 45.4
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.2e-42 175.6 201 44.8
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.2e-42 175.6 215 49.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 5.4e-42 175.3 216 47.7
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 5.4e-42 175.3 173 51.4
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 7.1e-42 174.9 208 46.6
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 7.1e-42 174.9 150 55.3
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 9.3e-42 174.5 231 44.2
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.2e-41 174.1 208 45.2
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.2e-41 174.1 221 43.4
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.6e-41 173.7 199 46.7
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.6e-41 173.7 209 43.5
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-41 172.6 208 46.2
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.5e-41 172.6 189 47.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.6e-41 172.2 196 45.4
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 7.9e-41 171.4 209 43.5
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.3e-40 169.9 218 43.6
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 3.9e-40 169.1 197 48.7
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 3.9e-40 169.1 200 45.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.7e-40 167.9 209 44.5
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.5e-39 167.2 210 42.4
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.5e-39 167.2 214 42.1
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.5e-39 166.4 216 41.2
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.5e-39 166.4 216 41.2
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 3.6e-38 162.5 195 46.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 6.2e-38 161.8 194 43.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.1e-37 161.0 137 55.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 4.0e-37 159.1 214 43.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.0e-37 159.1 208 41.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.9e-37 158.3 195 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 9.0e-37 157.9 220 43.6
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 4.5e-36 155.6 203 45.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 7.6e-36 154.8 197 44.2
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.1e-34 151.0 137 54.7
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 4.2e-34 149.1 86 82.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.6e-33 145.6 257 34.2
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.9e-31 140.2 184 40.2
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 5.8e-28 128.6 113 55.8
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 7.6e-28 128.3 140 47.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 3.5e-25 119.4 205 36.6
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 3.5e-25 119.4 138 45.7
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.6e-25 119.0 206 37.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.0e-24 117.9 116 50.0
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.5e-23 113.2 152 48.7
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.3e-21 105.5 143 41.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.6e-20 103.2 161 42.2
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.9e-19 99.8 143 38.5
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.9e-18 97.1 142 40.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.5e-15 86.7 171 32.7
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.1e-13 81.3 67 55.2
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 3.1e-13 79.7 75 49.3
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.9e-12 75.5 67 49.3
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.2e-09 67.8 109 38.5
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 3.0e-08 63.2 112 33.9
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.4e-07 59.3 48 56.2
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-06 57.8 114 31.6


User provided reference genes

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