Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.0e-100 367.9 196 100.0
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.5e-99 365.5 194 100.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 9.4e-99 363.6 194 99.5
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 4.4e-88 328.2 197 87.3
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.2e-87 325.9 198 90.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.4e-86 323.2 197 86.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 5.2e-81 304.7 198 81.8
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.2e-79 299.3 198 80.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.9e-78 296.2 198 78.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.0e-76 290.4 199 78.4
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.9e-76 288.5 199 77.9
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.3e-75 285.4 200 77.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-72 276.9 201 78.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.0e-72 276.2 197 80.2
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.6e-72 275.8 198 75.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 5.8e-72 274.6 197 76.6
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.8e-72 273.9 206 77.7
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 4.1e-70 268.5 200 78.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.2e-70 267.3 200 70.5
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 7.8e-69 264.2 197 78.2
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.5e-67 257.3 188 71.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.0e-65 251.9 202 66.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 3.5e-61 238.8 202 63.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.3e-60 236.1 196 64.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.1e-58 229.6 199 61.8
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.1e-58 229.6 198 63.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.1e-57 227.3 207 62.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.1e-57 227.3 202 60.9
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.8e-57 226.5 203 61.1
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.0e-57 225.3 202 64.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 5.2e-57 224.9 199 61.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-56 223.8 206 65.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.2e-56 223.8 209 64.6
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.5e-56 223.4 202 59.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.0e-56 223.0 205 62.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.0e-56 223.0 205 61.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.0e-56 223.0 199 64.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.6e-56 222.6 197 62.9
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.4e-56 221.9 198 64.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.4e-56 221.9 209 63.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 7.6e-56 221.1 199 63.3
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.6e-56 221.1 199 63.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 7.6e-56 221.1 201 65.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.9e-55 218.4 203 59.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.9e-55 218.4 203 59.1
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 6.4e-55 218.0 197 64.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.4e-54 216.9 206 63.6
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.4e-54 216.1 204 62.7
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.4e-54 216.1 204 62.7
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 5.4e-54 214.9 205 61.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.2e-54 214.2 204 62.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-53 213.8 209 57.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-53 213.4 202 58.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.7e-53 212.6 206 56.3
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 2.7e-53 212.6 215 56.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.7e-53 212.6 199 59.3
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.5e-53 212.2 208 57.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 4.6e-53 211.8 213 61.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 7.8e-53 211.1 209 58.9
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.0e-52 210.7 216 59.3
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.7e-52 209.9 202 59.4
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.3e-52 209.5 212 58.0
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.0e-52 209.1 214 55.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.9e-52 208.8 211 55.5
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.9e-52 208.8 213 59.2
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.9e-52 208.8 206 58.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.1e-52 208.4 185 60.5
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.1e-52 208.4 201 57.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.1e-52 208.4 217 59.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 6.6e-52 208.0 206 55.8
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-51 206.5 201 57.2
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.9e-51 206.5 191 55.5
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.5e-51 206.1 204 55.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.6e-51 204.1 204 56.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.8e-50 202.6 202 53.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.8e-50 202.6 216 57.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.6e-50 202.2 202 61.4
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.6e-50 202.2 219 57.5
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 4.7e-50 201.8 207 60.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.7e-50 201.8 212 58.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 8.1e-50 201.1 210 59.0
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.9e-49 198.0 209 55.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.4e-48 195.7 227 52.0
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 3.4e-48 195.7 201 55.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 5.8e-48 194.9 204 55.4
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.7e-47 193.4 221 53.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.7e-47 193.4 220 51.4
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.7e-47 193.4 209 51.2
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.9e-47 192.6 213 53.5
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.8e-47 192.2 202 52.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 6.4e-47 191.4 162 61.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.4e-46 190.3 198 52.5
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 2.4e-46 189.5 204 52.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 4.2e-46 188.7 203 57.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-45 187.2 215 55.3
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.7e-45 186.0 207 51.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-45 185.7 145 66.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.6e-45 185.3 193 53.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.0e-45 184.9 203 57.1
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.3e-44 183.7 207 55.6
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.7e-44 183.3 158 59.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 3.9e-44 182.2 208 52.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.1e-43 180.6 223 52.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.1e-43 180.6 207 51.2
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.9e-43 179.9 152 61.2
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 9.6e-43 177.6 219 50.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.3e-42 177.2 208 52.9
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.6e-42 175.6 214 48.6
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.8e-42 175.3 188 51.6
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.0e-40 169.9 203 46.3
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.9e-40 167.5 133 66.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 3.8e-39 165.6 181 57.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 8.4e-39 164.5 199 46.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.2e-37 160.6 209 46.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.1e-37 159.8 178 48.3
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 6.0e-37 158.3 213 50.2
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.3e-36 157.1 179 50.8
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 7.4e-35 151.4 138 56.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.8e-34 149.4 127 58.3
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 3.7e-34 149.1 207 41.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.1e-33 146.0 199 42.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.0e-33 145.6 206 43.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.5e-32 142.1 196 42.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.8e-31 139.0 127 52.0
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 3.8e-31 139.0 222 40.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.9e-31 138.7 210 41.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.5e-30 136.3 222 37.8
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 3.2e-30 136.0 187 42.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.6e-29 133.7 118 63.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.3e-27 125.9 139 43.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.3e-27 125.9 138 52.2
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.6e-26 123.6 169 46.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-26 123.2 135 50.4
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 6.2e-26 121.7 135 41.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.2e-24 117.5 97 51.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.7e-23 113.6 137 43.1
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.9e-23 112.8 202 38.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.1e-22 110.9 104 57.7
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 4.6e-21 105.5 132 39.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.0e-21 105.1 121 52.1
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.9e-21 104.8 141 42.6
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.3e-20 104.0 203 36.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.3e-20 103.2 183 38.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.1e-20 102.1 121 51.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.1e-19 100.9 120 45.0
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.4e-17 93.2 86 47.7
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 6.9e-17 91.7 101 44.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.2e-15 86.7 116 36.2
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.9e-15 86.3 106 38.7
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 5.0e-15 85.5 75 64.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 8.5e-15 84.7 182 36.3
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 4.6e-13 79.0 109 40.4
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.0e-12 77.8 73 61.6
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 5.1e-12 75.5 115 46.1
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.7e-10 70.5 112 46.4
C03p31080 Brassica napus HOM05D004429 ORTHO05D103234 2.2e-10 70.1 55 72.7
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.4e-09 66.6 170 31.8
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 4.5e-08 62.4 66 62.1
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 4.5e-08 62.4 89 46.1
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.0e-07 61.2 66 62.1
AT1G55710 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 7.2e-06 55.1 66 59.1


User provided reference genes

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