Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 7.0e-37 156.8 78 100.0
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-24 115.9 70 77.1
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.4e-24 115.9 70 77.1
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.4e-24 115.9 75 73.3
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.0e-24 114.4 70 75.7
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 8.8e-24 113.2 70 74.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 8.8e-24 113.2 70 74.3
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 8.8e-24 113.2 70 74.3
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 2.0e-23 112.1 70 74.3
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-23 111.3 70 77.1
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-23 111.3 70 72.9
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-23 111.3 70 72.9
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.3e-22 109.4 70 72.9
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 3.3e-18 94.7 70 67.1
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 4.2e-18 94.4 73 67.1
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 7.2e-18 93.6 71 69.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-17 92.8 71 63.4
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-17 92.0 71 64.8
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-17 92.0 71 64.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-17 92.0 71 64.8
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.8e-17 91.7 76 59.2
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.0e-16 87.8 76 57.9
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 4.0e-16 87.8 76 57.9
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.8e-16 87.0 71 66.2
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 6.8e-16 87.0 71 62.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 8.9e-16 86.7 71 62.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.9e-16 86.7 71 62.0
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.9e-16 86.7 71 62.0
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.2e-15 86.3 69 60.9
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.5e-15 85.9 71 64.8
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.0e-15 85.5 71 62.0
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-15 85.5 71 62.0
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.0e-15 85.5 71 57.7
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 2.0e-15 85.5 71 60.6
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.6e-15 85.1 76 56.6
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.6e-15 85.1 76 53.9
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 3.4e-15 84.7 76 56.6
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 3.4e-15 84.7 76 57.9
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 3.4e-15 84.7 76 57.9
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 4.4e-15 84.3 76 53.9
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.4e-15 84.3 71 57.7
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 4.4e-15 84.3 71 57.7
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.4e-15 84.3 76 56.6
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.4e-15 84.3 71 59.2
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 5.7e-15 84.0 71 62.0
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 5.7e-15 84.0 71 59.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.7e-15 84.0 71 59.2
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.7e-15 84.0 71 59.2
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 7.5e-15 83.6 71 60.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 7.5e-15 83.6 76 53.9
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 7.5e-15 83.6 76 56.6
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 9.8e-15 83.2 71 60.6
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.3e-14 82.8 71 59.2
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-14 82.0 71 59.2
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.2e-14 82.0 76 51.3
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.2e-14 82.0 71 59.2
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 2.2e-14 82.0 71 56.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 2.2e-14 82.0 71 60.6
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.2e-14 82.0 76 51.3
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.9e-14 81.6 71 59.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.9e-14 81.6 71 54.9
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.9e-14 81.6 71 59.2
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.9e-14 81.6 71 59.2
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 3.7e-14 81.3 71 59.2
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 4.9e-14 80.9 71 56.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.9e-14 80.9 71 56.3
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 6.3e-14 80.5 76 53.9
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 8.3e-14 80.1 76 53.9
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 8.3e-14 80.1 71 56.3
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 8.3e-14 80.1 69 58.0
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 8.3e-14 80.1 71 52.1
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 8.3e-14 80.1 71 57.7
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 8.3e-14 80.1 71 59.2
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.1e-13 79.7 71 56.3
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.1e-13 79.7 71 59.2
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.4e-13 79.3 76 51.3
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.4e-13 79.3 76 51.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.4e-13 79.3 71 59.2
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.4e-13 79.3 71 52.1
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.4e-13 79.3 71 57.7
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.8e-13 79.0 71 54.9
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.4e-13 78.6 71 54.9
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.4e-13 78.6 71 53.5
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.4e-13 78.6 77 50.6
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.4e-13 78.6 77 50.6
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 2.4e-13 78.6 71 54.9
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.2e-13 78.2 74 51.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 3.2e-13 78.2 76 50.0
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 4.1e-13 77.8 71 54.9
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 5.4e-13 77.4 71 50.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 5.4e-13 77.4 71 50.7
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.4e-13 77.4 71 49.3
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 7.0e-13 77.0 71 53.5
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 9.2e-13 76.6 71 53.5
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 9.2e-13 76.6 71 53.5
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 9.2e-13 76.6 71 57.7
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 9.2e-13 76.6 71 49.3
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.2e-12 76.3 71 56.3
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.6e-12 75.9 71 52.1
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.6e-12 75.9 76 52.6
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.6e-12 75.9 71 54.9
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.6e-12 75.9 71 53.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 2.0e-12 75.5 74 54.1
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.0e-12 75.5 71 50.7
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 2.0e-12 75.5 71 57.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.0e-12 75.5 78 50.0
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.0e-12 75.5 69 49.3
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.0e-12 75.5 74 48.6
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.7e-12 75.1 70 55.7
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.7e-12 75.1 71 53.5
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 2.7e-12 75.1 71 56.3
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.7e-12 75.1 71 54.9
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 3.5e-12 74.7 47 78.7
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 3.5e-12 74.7 71 57.7
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 3.5e-12 74.7 71 57.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 4.6e-12 74.3 76 52.6
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 4.6e-12 74.3 71 56.3
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 4.6e-12 74.3 76 51.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 4.6e-12 74.3 69 50.7
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 7.8e-12 73.6 71 54.9
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 7.8e-12 73.6 71 54.9
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.0e-11 73.2 71 52.1
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.0e-11 73.2 76 50.0
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.3e-11 72.8 73 53.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.7e-11 72.4 71 52.1
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.7e-11 72.4 71 49.3
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.3e-11 72.0 71 54.9
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.9e-11 71.6 71 49.3
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 3.9e-11 71.2 71 46.5
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.6e-11 70.5 77 49.4
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.5e-10 69.3 71 52.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-10 69.3 71 50.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.3e-10 68.2 73 49.3
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 7.3e-10 67.0 71 52.1
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 7.3e-10 67.0 76 46.1
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 9.5e-10 66.6 76 44.7
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.8e-09 65.1 72 48.6
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 3.6e-09 64.7 76 43.4
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.4e-07 57.8 76 42.1
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 9.8e-07 56.6 70 42.9
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 8.3e-06 53.5 53 52.8


User provided reference genes

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